Gene omics information

Query gene ID	1617074_s_at
Gene name	similar to Os04g0237300 /// similar to RNA polymerase alpha subunit /// similar to RNA polymerase alpha subunit
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	64.1	1617074_s_at	CF204027.1	similar to Os04g0237300 /// similar to RNA polymerase alpha subunit /// similar to RNA polymerase alpha subunit	-	3e-128	Atcg00750	-	S.X.	H.G.	Please select
0.83	94.6	1614676_s_at	BQ793152	ATP synthase subunit a, chloroplastic	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.73	90.8	1614408_at	CB978599	-	-	5e-25	Atcg01130	-	S.X.	H.G.	Please select
0.67	87.9	1614922_at	CA816734	-	-	2e-12	Atcg00050	-	S.X.	H.G.	Please select
0.67	87.9	1618524_x_at	CF202257.1	-	-	7e+0	At3g57840	self-incompatibility protein-related	S.X.	H.G.	Please select
0.50	72.7	1611270_s_at	CF213958	-	-	1e-52	Atcg00070	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	99.1	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
7.0	99.1	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
6.5	98.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
5.8	98.6	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
5.6	98.4	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
5.2	98.2	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
5.2	98.2	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
4.7	97.7	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.6	97.6	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
4.3	97.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	0	1293	1622010_at	CF207538	similar to RNA polymerase alpha subunit	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.28	0	1293	1614503_at	CB972598	-	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.02	1e-4	46	1612853_at	CD721067	-	-	1e+1	Atcg00750	-	C.G.	S.X.	Please select
0.02	1e-4	46	1609076_at	CD721067	-	-	1e+1	Atcg00750	-	C.G.	S.X.	Please select
0.03	4e-1	34	1614020_at	BQ796624	hypothetical protein LOC100261553	-	8e-1	At3g62420	ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53)	C.G.	S.X.	Please select
0.02	2e+0	32	1619537_at	CB970345	-	-	1e+0	At3g50200	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1615013_at	CB341279	-	-	3e-10	At4g28706	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1614816_at	CB972795	hypothetical protein LOC100247033	-	3e+0	At5g20970	heat shock family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1612442_at	BQ798338	-	-	4e+0	Atmg00890	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	3e-128	458	Arabidopsis thaliana	Atcg00750	-	-	30S chloroplast ribosomal protein S11	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	3e-42	173	Glycine max	GmaAffx.18223.1.A1_at	BU551287	-	-	3e-174	Atcg00740	-	C.G.	S.X.	Please select
0.21	4e-33	141	Hordeum vulgare	Contig22529_at	Contig22529	-	-	1e-58	Atcg00740	-	C.G.	S.X.	Please select
0.48	2e-25	117	Oryza sativa	OsAffx.32332.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	1e-146	519	Populus trichocarpa	PtpAffx.198.1.S1_at	CV242920	hypothetical protein	-	3e-115	Atcg00750	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	2e-33	143	Triticum aestivum	TaAffx.129824.1.S1_s_at	CK159033	-	-	9e-22	Atcg00740	-	C.G.	S.X.	Please select
0.23	1e-23	109	Zea mays	ZmAffx.1513.1.S1_at	11990232-53	-	-	3e-25	Atcg00750	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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