CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617032_s_at

Gene name lipid transfer protein /// lipid transfer protein

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1617032_s_at AF465408.1 lipid transfer protein /// lipid transfer protein - 9e-1 At5g01870 lipid transfer protein, putative S.X. H.G.
0.44 64.1 1614492_at CF404505 hypothetical protein LOC100260946 - 7e-22 At5g47870 unknown protein S.X. H.G.
0.36 50.7 1606673_at CB005473 hypothetical protein LOC100253524 - 1e-13 At3g10620 ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26) S.X. H.G.
0.33 45.7 1609281_s_at AF467945.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative S.X. H.G.
0.29 37.7 1620454_s_at AF467946.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative S.X. H.G.
0.22 25.6 1612584_s_at CF211832 similar to putative ankyrin-repeat protein - 5e-39 At4g35450 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM147707 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 36
2.6 92.5 GSM147706 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 35
2.4 91.3 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
2.1 89.1 GSM147697 Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation 26
2.0 88.2 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
2.0 88.2 GSM147701 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 30
2.0 88.2 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
2.0 88.2 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
1.9 87.2 GSM147682 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 11
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 714 1622231_at AF467945.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative C.G. S.X.
0.70 0 714 1609281_s_at AF467945.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative C.G. S.X.
0.60 0 654 1620454_s_at AF467946.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative C.G. S.X.
0.60 0 654 1614363_at AF467946.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative C.G. S.X.
0.07 8e-8 56 1622416_at CF518913 hypothetical protein LOC100261985 - 9e-2 At5g01870 lipid transfer protein, putative C.G. S.X.
0.04 3e-1 34 1616914_at CF405605 - - 1e-14 At3g22845 emp24/gp25L/p24 protein-related C.G. S.X.
0.03 1e+0 32 1612883_at CF213322 hypothetical protein LOC100241955 - 2e-95 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.02 4e+0 30 1620506_at AF178989.1 - - 2e+0 At1g11430 plastid developmental protein DAG, putative C.G. S.X.
0.02 4e+0 30 1618422_s_at CB340766 hypothetical protein LOC100252914 - 2e-3 At5g23760 heavy-metal-associated domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 9e-1 34 Arabidopsis thaliana At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. - - - C.G. S.X.
0.06 2e-2 40 Glycine max Gma.1096.1.S1_at CD407195 - - 4e-4 At5g59310 LTP4 (LIPID TRANSFER PROTEIN 4) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare EBpi01_SQ002_L03_at EBpi01_SQ002_L03 - - 3e+0 At3g46090 ZAT7 C.G. S.X.
0.07 5e-1 36 Oryza sativa Os11g0116000 AK061182.1 - Plant lipid transfer protein/Par allergen familyprotein 2e+0 At2g41090 calmodulin-like calcium-binding protein, 22 kDa (CaBP-22) C.G. S.X.
0.08 1e+0 34 Populus trichocarpa PtpAffx.25004.4.S1_a_at CV237911 hypothetical protein - 1e-3 At5g01870 lipid transfer protein, putative C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.28882.1.S1_at CA655023 - - 7e-2 At1g54500 rubredoxin family protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.1094.1.A1_at BM339500 - - 2e-5 At5g26210 AL4 (ALFIN-LIKE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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