CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616981_at

Gene name phospholipase D alpha

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 88.6 1616981_at CB971105 phospholipase D alpha - 4e-52 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) S.X. H.G.
0.67 87.9 1606368_s_at CF208516 actin 1 - 0 At5g09810 ACT7 (ACTIN 7) S.X. H.G.
0.67 87.9 AFFX-Vvi-actin-3_s_at - actin 1 - 0 S.X. H.G.
0.64 84.7 1612293_at CB346119 hypothetical protein LOC100264912 - 1e-65 At4g09000 14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1) S.X. H.G.
0.63 84.3 1609191_s_at CB978023 hypothetical protein LOC100258056 - 0 At5g26751 ATSK11 S.X. H.G.
0.59 80.6 1611412_at CF517248 hypothetical protein LOC100244694 - 2e+0 At5g37480 unknown protein S.X. H.G.
0.57 79.8 AFFX-Vvi-actin-3_c6_s_at - actin 1 - 0 S.X. H.G.
0.55 77.3 1607887_at CF215963 hypothetical protein LOC100241008 - 2e+0 At5g50880 unknown protein S.X. H.G.
0.55 77.3 AFFX-Vvi-actin-3_c2_s_at - actin 1 - 0 S.X. H.G.
0.53 75.2 AFFX-Vvi-actin-3_c7_s_at - actin 1 - 0 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1.9 87.2 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM147701 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 30
1.8 86.0 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 34 1618986_at BQ796459 similar to Not CCR4-Not complex component, N-terminal; tRNA-binding arm - 3e-19 At5g18230 transcription regulator NOT2/NOT3/NOT5 family protein C.G. S.X.
0.01 1e+0 34 1610645_at CD004549 hypothetical protein LOC100251896 - 2e-13 At1g61620 phosphoinositide binding C.G. S.X.
0.01 1e+0 34 1610569_at CF514054 - - 5e-1 At1g78430 - C.G. S.X.
0.01 4e+0 32 1622864_at BQ794135 hypothetical protein LOC100243993 - 6e+0 At5g08130 BIM1 C.G. S.X.
0.02 4e+0 32 1622241_x_at CF205868.1 - - 4e-1 At2g22155 - C.G. S.X.
0.01 4e+0 32 1617707_at CF207480 hypothetical protein LOC100248444 - 2e-6 At5g61150 VIP4 (VERNALIZATION INDEPENDENCE 4) C.G. S.X.
0.02 4e+0 32 1616018_at CF205868.1 - - 4e-1 At2g22155 - C.G. S.X.
0.01 4e+0 32 1616011_at CB349137 hypothetical protein LOC100260003 - 9e-28 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
0.01 4e+0 32 1614304_at CF212546 similar to JAB - 2e-103 At1g71230 CSN5B (COP9-SIGNALOSOME 5B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 4e-52 206 Arabidopsis thaliana At3g15730 820816 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis. - - - C.G. S.X.
0.58 0 672 Glycine max Gma.4902.1.S1_at CD398435 - - 2e-50 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.30 4e-29 129 Hordeum vulgare Contig3043_at Contig3043 - - 8e-33 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.29 4e-35 151 Oryza sativa Os01g0172400 D73411.1 - Phospholipase D alpha 1 precursor (EC 3.1.4.4)(PLD alpha 1) (Choline phosphatase 1)(Phosphatidylcholine-hydrolyzing phospholipase D 1) 2e-33 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.46 0 831 Populus trichocarpa PtpAffx.200667.1.S1_x_at pmrna1297 hypothetical protein - 4e-78 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.23 6e-33 143 Triticum aestivum Ta.6988.1.S1_at CD877763 - - 2e-34 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.21 2e-30 133 Zea mays Zm.50.1.A1_at D73410.1 phospholipase D - 6e-34 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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