Gene omics information

Query gene ID	1616954_s_at
Gene name	hypothetical protein LOC100252003
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1616954_s_at	BQ794939	hypothetical protein LOC100252003	-	2e+1	At5g04470	SIM (SIAMESE)	S.X.	H.G.	Please select
0.71	89.5	1616654_x_at	CF202840.1	-	-	2e+1	At4g01430	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.46	66.5	1608259_at	CF205412.1	hypothetical protein LOC100255358	-	2e-6	At5g59520	ZIP2	S.X.	H.G.	Please select
0.43	61.5	1618607_s_at	CB972339	hypothetical protein LOC100255358	-	1e-3	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	S.X.	H.G.	Please select
0.02	3.2	1614765_at	CD003886	hypothetical protein LOC100242287	-	1e-78	At3g59870	unknown protein	S.X.	H.G.	Please select
0.02	3.2	1607123_at	CF204106.1	-	-	2e-9	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
4.5	97.5	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
4.5	97.5	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
4.4	97.3	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
4.2	97.1	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
4.0	96.7	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
4.0	96.7	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
4.0	96.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
4.0	96.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.9	96.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	1e-170	597	1616654_x_at	CF202840.1	-	-	2e+1	At4g01430	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.03	8e-2	36	1609732_at	CF415377	hypothetical protein LOC100253369	-	4e-3	At3g15870	oxidoreductase	C.G.	S.X.	Please select
0.02	8e-2	36	1608784_at	CF518269	hypothetical protein LOC100243287	-	2e-13	At3g56210	binding	C.G.	S.X.	Please select
0.03	3e-1	34	1616197_at	BQ795033	similar to cdc2MsC	-	1e+0	At3g05920	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	1606517_at	CB347191	hypothetical protein LOC100247111	-	5e-5	At1g20030	pathogenesis-related thaumatin family protein	C.G.	S.X.	Please select
0.01	5e+0	30	1622010_at	CF207538	similar to RNA polymerase alpha subunit	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.02	5e+0	30	1621729_at	CB347151	hypothetical protein LOC100257717	-	2e-56	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	C.G.	S.X.	Please select
0.03	5e+0	30	1621544_at	CF373059	-	-	3e-1	At3g13700	RNA-binding protein, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1620661_at	CB970699	hypothetical protein LOC100251688	-	1e-1	At5g39760	AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g04470	830326	SIM (SIAMESE)	Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	HgAffx.1689.1.S1_at	CK351001	-	-	3e+0	At5g04620	ATBIOF (BIOTIN F)	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	HT07L08u_at	HT07L08u	-	-	3e+0	At5g47210	nuclear RNA-binding protein, putative	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	Os09g0480500	9637.m02705	-	-	2e-1	At1g74430	MYB95 (myb domain protein 95)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-4	48	Populus trichocarpa	Ptp.3643.1.S1_at	BU836758	hypothetical protein	-	7e-3	At1g53620	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.59122.1.S1_at	CA607351	-	-	3e+0	At2g43930	protein kinase family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.16283.1.A1_s_at	AI637233	hypothetical protein LOC100279905	-	3e+0	At5g64880	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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