CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616944_at

Gene name hypothetical protein LOC100261951

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1616944_at CF211395 hypothetical protein LOC100261951 - 1e-1 At5g65400 unknown protein S.X. H.G.
0.67 87.9 1619357_at CB972316 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase - 3e-71 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative S.X. H.G.
0.50 72.7 1619065_at CB972322 hypothetical protein LOC100253987 - 1e-2 At4g30470 cinnamoyl-CoA reductase-related S.X. H.G.
0.46 66.5 1614440_at BQ796922 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase - 2e-53 At4g39980 DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1) S.X. H.G.
0.35 48.5 1618362_s_at CF200684.1 hypothetical protein LOC100255189 - 2e-74 At1g10670 ACLA-1 S.X. H.G.
0.29 37.7 1615742_at CB970670 5-enolpyruvylshikimate-3-phosphate synthase - 8e-121 At2g45300 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 99.4 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.6 98.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9 98.6 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.6 98.4 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4 97.3 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-7 56 1609688_at BQ792550 hypothetical protein LOC100265992 - 2e-15 At4g24380 unknown protein C.G. S.X.
0.03 1e-1 36 1616254_a_at CF210000 hypothetical protein LOC100261951 - 1e+0 At3g52800 zinc finger (AN1-like) family protein C.G. S.X.
0.02 4e-1 34 1619398_at CF215106 hypothetical protein LOC100261913 - 4e-135 At3g08550 KOB1 (KOBITO) C.G. S.X.
0.03 4e-1 34 1617776_at CF512941 - - 1e+0 At5g23440 FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1) C.G. S.X.
0.02 4e-1 34 1614372_at CF515488 hypothetical protein LOC100246424 - 2e-15 At5g23360 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.02 2e+0 32 1621600_at CB003240 - - 1e+0 At5g16480 tyrosine specific protein phosphatase family protein C.G. S.X.
0.02 2e+0 32 1619560_at CD721168 hypothetical protein LOC100247422 - 2e-6 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.02 2e+0 32 1617841_at CB003240 - - 1e+0 At5g16480 tyrosine specific protein phosphatase family protein C.G. S.X.
0.02 2e+0 32 1617603_at BQ797541 hypothetical protein LOC100262919 - 5e-9 At5g61970 signal recognition particle-related / SRP-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Arabidopsis thaliana At5g65400 836665 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOB - - - C.G. S.X.
0.50 9e-46 184 Glycine max GmaAffx.90450.1.S1_at CF805871 - - 3e-2 At4g24380 unknown protein C.G. S.X.
0.33 3e-12 71 Hordeum vulgare Contig8346_at Contig8346 - - 2e+0 At4g24380 unknown protein C.G. S.X.
0.45 1e-39 165 Oryza sativa Os07g0687100 AK062162.1 - Protein of unknown function DUF341 family protein 9e-3 At4g24380 unknown protein C.G. S.X.
0.43 2e-77 289 Populus trichocarpa Ptp.6753.1.S1_s_at CV244011 hypothetical protein - 2e-1 At1g09280 - C.G. S.X.
0.20 3e-8 59 Triticum aestivum Ta.4269.3.S1_at CA721821 - - 3e-2 At4g24380 unknown protein C.G. S.X.
0.14 2e-4 46 Zea mays Zm.8929.1.A1_a_at AW352606 hypothetical protein LOC100277218 - 5e+0 At4g02489 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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