Gene omics information

Query gene ID	1616923_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1616923_s_at	CB919379	-	-	3e-1	At3g55790	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1620493_at	CF518674	hypothetical protein LOC100266795	-	2e-6	At5g41960	unknown protein	S.X.	H.G.	Please select
0.61	83.2	1621259_at	BQ792070	hypothetical protein LOC100256240	-	2e-33	At5g04740	ACT domain-containing protein	S.X.	H.G.	Please select
0.52	73.9	1621516_at	CB923323	hypothetical protein LOC100244761	-	2e-3	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	S.X.	H.G.	Please select
0.50	72.7	1610968_at	BQ796931	similar to cysteine proteinase inhibitor	-	3e-11	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.48	68.8	1612267_at	CF211274	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.47	67.7	1613813_a_at	CF517294	-	-	3e-11	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	S.X.	H.G.	Please select
0.45	64.6	1608442_at	AF177590.1	ornithine aminotransferase	-	8e-60	At5g46180	delta-OAT	S.X.	H.G.	Please select
0.44	64.1	1607281_at	CB976932	hypothetical protein LOC100247365	-	5e-115	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select
0.44	64.1	1611599_at	BQ797186	hypothetical protein LOC100250312	-	1e-1	At1g78190	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.8	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.0	98.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.0	98.7	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.8	98.6	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.3	98.2	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.7	97.7	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-2	36	1619140_at	CF606031	hypothetical protein LOC100246049	-	4e-4	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please select
0.03	3e-1	34	1617251_at	BQ798174	hypothetical protein LOC100245662	-	1e+0	At5g66170	-	C.G.	S.X.	Please select
0.02	1e+0	32	1611847_at	BM437829	flavonoid-3,5'-hydroxylase	-	1e-1	At4g19660	NPR4 (NPR1-like protein 4)	C.G.	S.X.	Please select
0.03	1e+0	32	1606466_at	CF512311	hypothetical protein LOC100250341	-	1e-80	At1g79830	GC5 (golgin candidate 5)	C.G.	S.X.	Please select
0.01	5e+0	30	1620735_at	CA809248	hypothetical protein LOC100264528	-	3e-9	At1g56000	amine oxidase-related	C.G.	S.X.	Please select
0.02	5e+0	30	1619251_at	BQ797498	hypothetical protein LOC100260927	-	1e-26	At2g21320	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1618657_at	CF211626	hypothetical protein LOC100243180	-	2e-1	At4g20370	TSF (TWIN SISTER OF FT)	C.G.	S.X.	Please select
0.01	5e+0	30	1617606_at	CB978918	hypothetical protein LOC100253811	-	7e-57	At2g05710	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1617322_at	BQ796754	-	-	2e+0	At5g66700	HB53	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-1	36	Arabidopsis thaliana	At3g55790	824745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-1	38	Glycine max	PsAffx.C150000015_at	PsAffx.C150000015	-	-	2e+0	At3g05727	-	C.G.	S.X.	Please select
0.05	5e-1	34	Hordeum vulgare	Contig14435_at	Contig14435	-	-	3e-2	At2g40590	40S ribosomal protein S26 (RPS26B)	C.G.	S.X.	Please select
0.03	9e-3	42	Oryza sativa	Os08g0565800	AK062820.1	-	Glutaredoxin	3e-14	At4g28730	glutaredoxin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.219140.1.S1_at	pmrna34974	hypothetical protein	-	2e-1	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.113357.2.S1_x_at	CA614394	-	-	9e-1	At5g52020	AP2 domain-containing protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.2352.1.S1_at	CF009846	hypothetical protein LOC100277532	-	3e-1	At5g63480	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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