CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616867_at

Gene name hypothetical protein LOC100254223

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1616867_at CF405655 hypothetical protein LOC100254223 - 2e-17 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) S.X. H.G.
0.91 98.8 1622765_at CF405914 - - 4e+0 At3g59450 calcium-binding EF hand family protein S.X. H.G.
0.71 89.5 1617406_s_at CF415339 hypothetical protein LOC100266010 - 2e-8 At3g07220 transcriptional activator, putative S.X. H.G.
0.67 87.9 1617655_at CB348593 hypothetical protein LOC100262391 - 5e-10 At3g16620 ATTOC120 S.X. H.G.
0.60 81.9 1608653_at CB975644 hypothetical protein LOC100263217 - 5e+0 At4g15020 DNA binding / protein dimerization S.X. H.G.
0.60 81.9 1608813_s_at BQ795140 hypothetical protein LOC100255523 - 5e-84 At1g78870 UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.5 91.9 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436365 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436404 V. riparia (VR, PI588259) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 32 1621035_at CB006610 hypothetical protein LOC100249467 - 4e-18 At1g04210 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.04 1e+0 32 1620062_at CB350166 - - 4e+0 At3g58320 - C.G. S.X.
0.02 1e+0 32 1610210_at CA812095 hypothetical protein LOC100263114 - 8e-28 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.01 1e+0 32 1608434_at CB006610 - - 4e-18 At1g04210 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.01 5e+0 30 1622588_s_at CF207335 hypothetical protein LOC100267071 - 0 At5g49460 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) C.G. S.X.
0.04 5e+0 30 1622198_at CF201226.1 - - 4e+0 At4g32800 AP2 domain-containing transcription factor TINY, putative C.G. S.X.
0.03 5e+0 30 1619570_at CB344569 hypothetical protein LOC100245635 - 7e-18 At2g02050 NADH-ubiquinone oxidoreductase B18 subunit, putative C.G. S.X.
0.01 5e+0 30 1618753_at BQ796362 hypothetical protein LOC100267318 - 1e-89 At5g08570 pyruvate kinase, putative C.G. S.X.
0.02 5e+0 30 1615798_at AB073013.1 - - 1e-5 At1g66370 MYB113 (myb domain protein 113) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-17 89 Arabidopsis thaliana At3g01090 821259 AKIN10 (Arabidopsis SNF1 kinase homolog 10) encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase - - - C.G. S.X.
0.11 8e-27 121 Glycine max Gma.3374.1.S1_at CA819722 - - 3e-65 At3g29160 AKIN11 (Arabidopsis SNF1 kinase homolog 11) C.G. S.X.
0.03 5e-1 34 Hordeum vulgare Contig6241_at Contig6241 - - 8e-15 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) C.G. S.X.
0.04 3e-8 59 Oryza sativa Os08g0484600 D82038.1 - OSK4 1e-52 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) C.G. S.X.
0.18 1e-37 157 Populus trichocarpa PtpAffx.74520.2.S1_at CN523492 hypothetical protein - 8e-21 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) C.G. S.X.
0.05 3e-1 36 Triticum aestivum TaAffx.92935.1.A1_at BJ240939 - - 7e-5 At3g29160 AKIN11 (Arabidopsis SNF1 kinase homolog 11) C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.105.1.S1_at AI665537 - - 3e+0 At4g20000 VQ motif-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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