Gene omics information

Query gene ID	1616840_at
Gene name	hypothetical protein LOC100255499
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	89.7	1616840_at	CF608637	hypothetical protein LOC100255499	-	9e-15	At1g09140	SF2/ASF-like splicing modulator (SRP30)	S.X.	H.G.	Please select
0.61	83.2	1610434_at	CF404432	hypothetical protein LOC100244562	-	1e+0	At5g24090	acidic endochitinase (CHIB1)	S.X.	H.G.	Please select
0.44	64.1	1614602_at	CB004149	hypothetical protein LOC100244335	-	1e-32	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	S.X.	H.G.	Please select
0.44	64.1	1618813_at	CB970187	hypothetical protein LOC100263840	-	2e+0	At1g69828	-	S.X.	H.G.	Please select
0.44	64.1	1609801_at	CF404736	hypothetical protein LOC100258598	-	6e-47	At3g21650	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	S.X.	H.G.	Please select
0.42	60.1	1610526_at	CF212320	hypothetical protein LOC100243575	-	2e-1	At2g44580	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.41	58.7	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	S.X.	H.G.	Please select
0.39	54.9	1608147_s_at	CD802354	hypothetical protein LOC100265256	-	4e-72	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	S.X.	H.G.	Please select
0.33	45.7	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	S.X.	H.G.	Please select
0.33	45.7	1615071_at	CF512279	-	-	6e-13	At1g16810	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	91.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-8	57	1622518_at	CF514125	hypothetical protein LOC100255499	-	1e+0	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.03	9e-6	50	1620790_at	CF515444	hypothetical protein LOC100249710	-	5e-4	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e-3	42	1609558_at	CF201807.1	-	-	5e-25	At1g11360	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	4e-2	38	1619702_s_at	CF513399	hypothetical protein LOC100257030	-	3e-27	At1g11360	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1620322_at	CF511102	hypothetical protein LOC100253476	-	3e-2	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	C.G.	S.X.	Please select
0.04	5e-1	34	1610869_at	CF515388	hypothetical protein LOC100266461	-	4e-105	At5g08530	CI51 (51 kDa subunit of complex I)	C.G.	S.X.	Please select
0.02	2e+0	32	1618937_at	CB920899	hypothetical protein LOC100255532	-	2e-14	At4g29960	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1615868_at	CD797558	hypothetical protein LOC100251766	-	1e+0	At4g18692	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1612800_at	CB349551	hypothetical protein LOC100253251	-	4e-47	At2g18760	CHR8 (chromatin remodeling 8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	9e-15	81	Arabidopsis thaliana	At1g09140	837433	SF2/ASF-like splicing modulator (SRP30)	Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	1e-60	234	Glycine max	Gma.1034.2.S1_a_at	CD390455	-	-	1e-11	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	C.G.	S.X.	Please select
0.24	1e-6	54	Hordeum vulgare	Contig4304_at	Contig4304	-	-	3e-12	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select
0.19	1e-3	46	Oryza sativa	Os01g0316600	AK103534.1	-	SF2/ASF-like splicing modulator Srp30, variant 1	1e-9	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	2e-31	137	Populus trichocarpa	PtpAffx.210886.1.S1_at	pmrna21383	hypothetical protein	-	5e-25	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	5e-4	46	Triticum aestivum	TaAffx.2456.1.S1_at	CD879554	Alternative splicing regulator	-	2e-25	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select
0.11	9e-13	73	Zea mays	Zm.10359.1.S1_at	T69043	ASF/SF2-like pre-mRNA splicing factor SRP32	-	2e-19	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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