Gene omics information

Query gene ID 1616828_s_at
Gene name similar to Os03g0670700
Organism Vitis vinifera


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5577.31616828_s_atCD799685similar to Os03g0670700-1e+0At4g38680GRP2 (GLYCINE RICH PROTEIN 2)S.X.H.G.
0.5779.81621554_s_atCF511998similar to Os03g0670700-4e-6At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)S.X.H.G.
0.2225.61616273_atCB004363hypothetical protein LOC100252917-6e+0At5g49410unknown proteinS.X.H.G.
0.1414.41620042_atCF514775hypothetical protein LOC100243431-3e-76At2g47390serine-type endopeptidase/ serine-type peptidaseS.X.H.G.
0.077.81620607_s_atCB910956hypothetical protein LOC100259713-1e-1At2g47890zinc finger (B-box type) family proteinS.X.H.G.
0.077.81617861_atCB340880hypothetical protein LOC100258495-3e-5At2g37510RNA-binding protein, putativeS.X.H.G.
0.066.81621317_atCF514922similar to F10B6.22-2e-27At1g14810semialdehyde dehydrogenase family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.796.2GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.595.7GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.294.9GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.294.9GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.194.6GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.094.2GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
2.993.8GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.993.8GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69
2.893.4GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51
2.893.4GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.257e-672521621554_s_atCF511998similar to Os03g0670700-4e-6At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)C.G.S.X.
0.507e-642421622702_x_atCF204380.1--7e+0At5g48580FKBP15-2C.G.S.X.
0.507e-642421617550_s_atCF204380.1--7e+0At5g48580FKBP15-2C.G.S.X.
0.507e-642421612746_atCF204380.1--7e+0At5g48580FKBP15-2C.G.S.X.
0.042e-2381620377_atCB345480--3e+0At5g26170WRKY50C.G.S.X.
0.033e-1341617015_atCF209172hypothetical protein LOC100251082-3e-10At3g07010pectate lyase family proteinC.G.S.X.
0.031e+0321614634_atCF214982hypothetical protein LOC100249595-1e-43At1g65260PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)C.G.S.X.
0.025e+0301622745_atBQ796736hypothetical protein LOC100243616 /// hypothetical LOC100241452 /// hypothetical LOC100241972-4e-11At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)C.G.S.X.
0.025e+0301621878_atAB001375.1alpha-soluble NSF attachment protein-1e-26At3g56190ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+034Arabidopsis thalianaAt4g38680830024GRP2 (GLYCINE RICH PROTEIN 2)Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.---C.G.S.X.
0.144e-1375Glycine maxGma.5650.2.S1_a_atBG238507--4e-6At4g39260GR-RBP8C.G.S.X.
0.033e-548Hordeum vulgareContig17116_atContig17116--2e+0At4g39260GR-RBP8C.G.S.X.
0.065e-446Oryza sativaOs03g0670700AK119242.1-Glycine-rich RNA-binding protein GRP1A2e-6At4g39260GR-RBP8C.G.S.X.
0.092e-550Populus trichocarpaPtpAffx.249.633.A1_x_atCV259819--1e-9At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)C.G.S.X.
0.114e-342Triticum aestivumTa.17729.1.S1_x_atCA623878--6e-2At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)C.G.S.X.
0.081e-446Zea maysZm.10811.1.A1_s_atCK370484hypothetical protein LOC100192755 /// hypothetical protein LOC100277885 /// glycine-rich protein-1e-7At4g39260GR-RBP8C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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