Gene omics information

Query gene ID	1616823_at
Gene name	hypothetical protein LOC100257426
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1616823_at	CF608764	hypothetical protein LOC100257426	-	6e-7	At3g21175	ZML1 (ZIM-LIKE 1)	S.X.	H.G.	Please select
0.59	80.6	1612922_at	BQ795022	similar to FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription factor	-	1e+0	At1g02510	TPK4	S.X.	H.G.	Please select
0.58	79.8	1619972_at	CF511808	hypothetical protein LOC100263609	-	2e-1	At5g56770	unknown protein	S.X.	H.G.	Please select
0.55	77.3	1613582_at	CF204478.1	hypothetical protein LOC100261825	-	6e-12	At5g14170	CHC1	S.X.	H.G.	Please select
0.53	75.2	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	S.X.	H.G.	Please select
0.50	72.7	1622424_at	CA813635	hypothetical protein LOC100265980	-	9e-11	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	S.X.	H.G.	Please select
0.47	67.7	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	S.X.	H.G.	Please select
0.47	67.7	1617406_s_at	CF415339	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	S.X.	H.G.	Please select
0.43	61.5	1620693_at	CF513433	-	-	1e-12	At2g22730	transporter-related	S.X.	H.G.	Please select
0.39	54.9	1619784_at	CF209299	hypothetical protein LOC100248174	-	2e-9	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	91.3	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.0	88.2	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-8	59	1620757_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	C.G.	S.X.	Please select
0.07	1e-8	59	1612742_s_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	C.G.	S.X.	Please select
0.03	2e-3	42	1608006_at	CF517298	hypothetical protein LOC100246836	-	5e-10	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	C.G.	S.X.	Please select
0.01	6e-1	34	1622630_s_at	CF209498	hypothetical protein LOC100253858	-	1e-29	At2g41250	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.02	6e-1	34	1622108_at	CF405863	hypothetical protein LOC100262548	-	6e-2	At5g51480	SKS2 (SKU5 SIMILAR 2)	C.G.	S.X.	Please select
0.03	6e-1	34	1616071_at	CB978649	hypothetical protein LOC100259260	-	5e-58	At3g18480	AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)	C.G.	S.X.	Please select
0.01	6e-1	34	1609681_at	CB346928	hypothetical protein LOC100257895	-	6e-4	At4g03260	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.02	6e-1	34	1608888_at	CF208466	hypothetical protein LOC100258013	-	2e-13	At4g25130	peptide methionine sulfoxide reductase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	1619574_at	CB343067	hypothetical protein LOC100265787	-	4e-18	At4g35050	MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-7	56	Arabidopsis thaliana	At3g21175	821670	ZML1 (ZIM-LIKE 1)	member of a novel family of plant-specific GATA-type transcription factors.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	7e-35	149	Glycine max	Gma.3859.1.S1_at	BI470430	-	-	6e-2	At1g51600	TIFY2A	C.G.	S.X.	Please select
0.12	1e-15	83	Hordeum vulgare	Contig20936_at	Contig20936	-	-	3e-5	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select
0.12	2e-17	91	Oryza sativa	Os10g0400200	AK107314.1	-	Glutelin II precursor [Oryza sativa (japonicacultivar-group)]	2e-1	At1g18290	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	2e-41	171	Populus trichocarpa	PtpAffx.151377.2.S1_a_at	AJ767190	hypothetical protein	-	2e-6	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e-2	40	Triticum aestivum	TaAffx.60004.1.S1_at	CA502399	-	-	1e-4	At1g51600	TIFY2A	C.G.	S.X.	Please select
0.06	1e-2	40	Zea mays	Zm.7914.2.A1_at	CF634583	GATA transcription factor 25	-	1e-10	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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