Gene omics information

Query gene ID	1616806_at
Gene name	hypothetical protein LOC100259004
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1616806_at	CF605749	hypothetical protein LOC100259004	-	6e-2	At2g01340	unknown protein	S.X.	H.G.	Please select
0.77	92.3	1610567_at	CF212759	-	-	3e-5	At3g48185	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1608586_at	CF514688	hypothetical protein LOC100241814	-	4e-18	At4g21960	PRXR1	S.X.	H.G.	Please select
0.33	45.7	1613355_at	CB922574	hypothetical protein LOC100260952	-	6e-12	At5g07360	amidase family protein	S.X.	H.G.	Please select
0.25	30.5	1613351_at	CB972999	hypothetical protein LOC100252023	-	2e-1	At5g12970	C2 domain-containing protein	S.X.	H.G.	Please select
0.18	19.4	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-2	38	1622641_at	CB008231	hypothetical protein LOC100255988	-	3e-2	At3g49300	proline-rich family protein	C.G.	S.X.	Please select
0.04	2e-2	38	1616828_s_at	CD799685	similar to Os03g0670700	-	1e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.03	3e-1	34	1618101_at	CF405874	hypothetical protein LOC100259048	-	9e-2	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.04	3e-1	34	1614706_s_at	CF605994	-	-	4e-3	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.03	3e-1	34	1613127_at	CF604632	hypothetical protein LOC100252080	-	1e-3	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select
0.04	3e-1	34	1611848_at	CF568803	-	-	4e-3	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1622386_at	BQ794629	hypothetical protein LOC100264172	-	9e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.03	1e+0	32	1621914_s_at	CF216047	hypothetical protein LOC100249014	-	2e-5	At5g50740	metal ion binding	C.G.	S.X.	Please select
0.06	1e+0	32	1620986_at	CF372684	-	-	2e-2	At2g31957	LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-2	38	Arabidopsis thaliana	At2g01340	814662	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-2	40	Glycine max	GmaAffx.78636.1.S1_at	BQ627652	-	-	1e+1	At5g20500	glutaredoxin, putative	C.G.	S.X.	Please select
0.06	7e-6	50	Hordeum vulgare	Contig22184_at	Contig22184	-	-	5e+0	At5g56070	unknown protein	C.G.	S.X.	Please select
0.11	2e-6	54	Oryza sativa	Os10g0451601	9638.m02711	-	-	4e-3	At1g30475	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e-6	52	Populus trichocarpa	PtpAffx.207591.1.S1_x_at	pmrna15065	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e-2	40	Triticum aestivum	TaAffx.57536.1.S1_at	CA627341	-	-	2e-1	At2g36100	integral membrane family protein	C.G.	S.X.	Please select
0.04	6e-3	40	Zea mays	Zm.1305.1.S1_at	AF034945.1	glycine-rich RNA binding protein	-	1e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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