Gene omics information

Query gene ID	1616802_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1616802_s_at	CF200896.1	-	-	2e+0	At2g43060	transcription factor	S.X.	H.G.	Please select
0.73	90.8	1618481_at	CF213085	hypothetical protein LOC100266840	-	1e-13	At1g65320	CBS domain-containing protein	S.X.	H.G.	Please select
0.73	90.8	1606933_a_at	CB007886	-	-	1e-20	At1g01360	unknown protein	S.X.	H.G.	Please select
0.44	64.1	1617158_at	CB920605	hypothetical protein LOC100251931	-	4e-17	At5g19630	unknown protein	S.X.	H.G.	Please select
0.18	19.4	1612828_at	BQ799707	hypothetical protein LOC100241128	-	3e-14	At3g60340	palmitoyl protein thioesterase family protein	S.X.	H.G.	Please select
0.07	7.8	1618964_at	CB339459	hypothetical protein LOC100266690	-	1e-12	At3g03100	NADH:ubiquinone oxidoreductase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
3.0	94.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.0	94.2	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
2.5	91.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.5	91.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.4	91.3	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.85	2e-81	299	1621897_x_at	CF200896.1	-	-	2e+0	At2g43060	transcription factor	C.G.	S.X.	Please select
0.85	2e-81	299	1621287_at	CF200896.1	-	-	2e+0	At2g43060	transcription factor	C.G.	S.X.	Please select
0.22	6e-69	258	1606933_a_at	CB007886	-	-	1e-20	At1g01360	unknown protein	C.G.	S.X.	Please select
0.05	4e-2	36	1614875_at	CF518552	-	-	4e+0	At5g57900	SKIP1 (SKP1 INTERACTING PARTNER 1)	C.G.	S.X.	Please select
0.03	7e-1	32	1621406_at	CF205304.1	-	-	1e-13	At4g36190	serine-type peptidase	C.G.	S.X.	Please select
0.04	7e-1	32	1611465_at	CF511524	-	-	2e-1	At3g45200	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	1618117_at	CB979124	-	-	3e+0	At3g44310	NIT1	C.G.	S.X.	Please select
0.03	3e+0	30	1617731_at	CB971121	hypothetical protein LOC100263135	-	2e-12	At4g19670	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	3e+0	30	1614831_at	CF209966	hypothetical protein LOC100243109	-	7e-8	At5g48600	ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At2g43060	818908	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Glycine max	GmaAffx.56121.1.A1_at	BU544917	-	-	5e-2	At1g34440	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Hordeum vulgare	Contig21425_at	Contig21425	-	-	6e+0	At5g13340	unknown protein	C.G.	S.X.	Please select
0.04	2e+1	30	Oryza sativa	OsAffx.31522.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	32	Populus trichocarpa	PtpAffx.211494.1.S1_at	pmrna22527	hypothetical protein	-	8e-6	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+1	30	Triticum aestivum	TaAffx.91363.1.A1_x_at	BQ160808	-	-	7e+0	At3g27130	-	C.G.	S.X.	Please select
0.05	1e+0	32	Zea mays	ZmAffx.434.1.A1_at	AI676950	gpm2 protein	-	2e-1	At3g01790	ribosomal protein L13 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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