CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616786_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1616786_at CB976754 - - 1e+0 At5g38386 F-box family protein S.X. H.G.
0.56 79.4 1611258_at CD719985 hypothetical protein LOC100265514 - 4e+0 At1g25988 - S.X. H.G.
0.46 66.5 1618717_at CB969401 hypothetical protein LOC100253557 - 7e-19 At3g46220 unknown protein S.X. H.G.
0.44 64.1 1606771_at CF517362 - - 3e-39 At4g00660 DEAD/DEAH box helicase, putative S.X. H.G.
0.41 58.7 1609620_at CB979452 - - 7e+0 At5g51845 - S.X. H.G.
0.41 58.7 1607651_at CF516170 hypothetical protein LOC100249663 - 7e-9 At5g57140 PAP28 (PURPLE ACID PHOSPHATASE 28) S.X. H.G.
0.40 57.7 1621862_at CF510931 hypothetical protein LOC100267900 - 2e+0 At1g15930 40S ribosomal protein S12 (RPS12A) S.X. H.G.
0.38 53.6 1611084_at CA816784 - - 6e+0 At3g26690 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) S.X. H.G.
0.38 53.6 1613361_s_at CF211823 hypothetical protein LOC100242707 - 4e-2 At5g55750 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.36 50.7 1621182_at CD717861 hypothetical protein LOC100259532 - 1e-3 At3g48590 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 96.7 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
4.0 96.7 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
3.7 96.2 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
3.7 96.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.4 95.5 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
3.2 94.9 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.9 93.8 GSM147718 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 47
2.8 93.4 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
2.8 93.4 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
2.6 92.5 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 34 1622787_at CF607318 hypothetical protein LOC100244878 - 4e-19 At5g62500 ATEB1B (END BINDING PROTEIN 1B) C.G. S.X.
0.03 3e-1 34 1622373_at CF516583 - - 4e-1 At4g25410 DNA binding / transcription factor C.G. S.X.
0.02 1e+0 32 1620520_s_at BQ797142 hypothetical protein LOC100252105 - 2e-23 At3g62600 ATERDJ3B C.G. S.X.
0.02 1e+0 32 1612514_at CF511409 - - 6e+0 At5g65609 unknown protein C.G. S.X.
0.03 1e+0 32 1611768_at CF208458 hypothetical protein LOC100249159 - 1e-12 At1g54270 EIF4A-2 C.G. S.X.
0.02 1e+0 32 1607872_at CF372721 hypothetical protein LOC100252972 - 2e-73 At1g04750 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) C.G. S.X.
0.02 5e+0 30 1617450_at CF519138 urate oxidase - 6e-7 At2g26230 uricase / urate oxidase / nodulin 35, putative C.G. S.X.
0.02 5e+0 30 1612732_at CD714809 - - 2e-25 At1g53400 unknown protein C.G. S.X.
0.02 5e+0 30 1612399_at CB340153 - - 1e-16 At1g50260 NTMC2T5.1 (N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At5g38386 833823 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 1e+0 34 Glycine max GmaAffx.50335.1.S1_at BI426664 - - 6e-5 At3g52170 DNA binding C.G. S.X.
0.02 5e-1 34 Hordeum vulgare Contig10422_at Contig10422 - - 2e+0 At3g01327 - C.G. S.X.
0.02 5e-1 36 Oryza sativa OsAffx.11390.1.S1_at - - - 0 C.G. S.X.
0.04 2e-2 40 Populus trichocarpa PtpAffx.67745.1.A1_at DN485531 - - 3e+0 At5g66870 ASL1 C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.31694.1.S1_at CA609776 - - 3e+0 At2g41650 unknown protein C.G. S.X.
0.03 7e+0 30 Zea mays Zm.5759.1.A1_at BM075398 - - 5e+0 At5g23405 high mobility group (HMG1/2) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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