Gene omics information

Query gene ID	1616784_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	75.2	1616784_at	CD007778	-	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	S.X.	H.G.	Please select
0.60	81.9	1609123_at	CF215118	hypothetical protein LOC100259150	-	2e-55	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	S.X.	H.G.	Please select
0.55	77.3	1616358_at	BQ798612	MLO14 protein	-	1e+0	At5g27170	unknown protein	S.X.	H.G.	Please select
0.44	64.1	1608672_s_at	CK138170.1	-	-	6e-33	At2g21580	40S ribosomal protein S25 (RPS25B)	S.X.	H.G.	Please select
0.38	53.6	1618060_at	CF513542	hypothetical protein LOC100252303	-	5e-41	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select
0.36	50.7	1618216_at	CF415755	hypothetical protein LOC100259302	-	5e-47	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	S.X.	H.G.	Please select
0.12	12.1	1613284_s_at	CF607046	hypothetical protein LOC100261107	-	6e-1	At4g31030	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	99.2	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2658	1612947_at	CF604192	hypothetical protein LOC100258345	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	C.G.	S.X.	Please select
0.02	1e-5	50	1621808_s_at	CF215238	hypothetical protein LOC100264533	-	2e-3	At4g37300	MEE59 (maternal effect embryo arrest 59)	C.G.	S.X.	Please select
0.02	1e-5	50	1621625_s_at	CF513375	hypothetical protein LOC100264067	-	5e-10	At4g22360	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select
0.02	1e-5	50	1621034_at	CF406031	hypothetical protein LOC100244738 /// similar to phosphoenolpyruvate carboxykinase /// hypothetical protein LOC100257809	-	4e-110	At4g37870	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	C.G.	S.X.	Please select
0.03	1e-5	50	1619379_at	CF604687	hypothetical protein LOC100266779	-	3e-7	At1g12500	phosphate translocator-related	C.G.	S.X.	Please select
0.03	1e-5	50	1618387_at	CF215295	hypothetical protein LOC100249044	-	4e-25	At2g01970	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.02	1e-5	50	1617919_at	CF605842	hypothetical protein LOC100261876	-	2e+0	At4g26830	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.02	1e-5	50	1615617_at	CF603834	hypothetical protein LOC100249849	-	2e+0	At2g05370	-	C.G.	S.X.	Please select
0.02	1e-5	50	1614910_at	CF604623	hypothetical protein LOC100262364	-	6e+0	At5g48580	FKBP15-2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	5e-45	182	Arabidopsis thaliana	At3g19640	821501	magnesium transporter CorA-like family protein (MRS2-3)	F:metal ion transmembrane transporter activity;P:metal ion transport;C:plasma membrane, membrane;PFMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	5e-61	236	Glycine max	Gma.11250.1.S1_a_at	AI443402	-	-	1e-13	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	C.G.	S.X.	Please select
0.09	6e-15	81	Hordeum vulgare	Contig15409_at	Contig15409	-	-	7e-17	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	C.G.	S.X.	Please select
0.06	9e-5	50	Oryza sativa	Os01g0908500	AK072213.1	-	Mg2+ transporter protein, CorA-like family protein	2e-5	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	5e-61	236	Populus trichocarpa	PtpAffx.18890.2.S1_at	CK106884	magnesium transporter	-	4e-22	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	8e-10	65	Triticum aestivum	Ta.27842.1.S1_at	CD869696	-	-	3e-20	At1g16010	magnesium transporter CorA-like family protein (MRS2-1)	C.G.	S.X.	Please select
0.09	5e-9	61	Zea mays	Zm.3862.1.S1_at	CF674954	-	-	4e-6	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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