Gene omics information

Query gene ID	1616747_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	91.5	1616747_at	CF205411.1	-	-	1e-15	At4g09012	-	S.X.	H.G.	Please select
0.46	66.5	1615292_at	CF214583	similar to oligopeptidase A	-	1e-37	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	S.X.	H.G.	Please select
0.42	60.1	1622775_at	CF415430	hypothetical protein LOC100241371	-	3e-7	At4g00570	malate oxidoreductase, putative	S.X.	H.G.	Please select
0.38	53.6	1612831_s_at	CF201533.1	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	S.X.	H.G.	Please select
0.34	46.8	1611197_at	CA812412	hypothetical protein LOC100259765	-	4e-16	At1g78895	-	S.X.	H.G.	Please select
0.32	43.1	1607488_at	CF373706	hypothetical protein LOC100245682	-	1e+0	At3g06985	LCR44 (Low-molecular-weight cysteine-rich 44)	S.X.	H.G.	Please select
0.31	41.3	1609313_at	CF403611	similar to 2-oxo acid dehydrogenase, lipoyl-binding site	-	6e-2	At4g22320	unknown protein	S.X.	H.G.	Please select
0.31	41.3	1618498_at	CB008237	hypothetical protein LOC100255416	-	7e-6	At5g01980	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.28	37.7	1616447_at	BQ792485	hypothetical protein LOC100242721	-	5e+0	At5g25210	unknown protein	S.X.	H.G.	Please select
0.27	34.0	1617006_at	CF514282	hypothetical protein LOC100255735	-	6e-10	At4g33350	chloroplast inner membrane import protein Tic22, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
2.3	90.7	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
2.3	90.7	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.2	89.9	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	930	1612688_at	CF207339	hypothetical protein LOC100250642	-	8e-15	At5g39800	60S ribosomal protein-related	C.G.	S.X.	Please select
0.77	0	930	1608004_s_at	CF207339	hypothetical protein LOC100250642	-	8e-15	At5g39800	60S ribosomal protein-related	C.G.	S.X.	Please select
0.02	9e-2	36	1608688_s_at	CF211998	hypothetical protein LOC100261500	-	7e-29	At4g22990	SPX (SYG1/Pho81/XPR1) domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	1616917_at	CB001568	-	-	4e-1	At1g09240	NAS3 (NICOTIANAMINE SYNTHASE 3)	C.G.	S.X.	Please select
0.02	3e-1	34	1613070_at	CB001568	hypothetical protein LOC100241511	-	4e-1	At1g09240	NAS3 (NICOTIANAMINE SYNTHASE 3)	C.G.	S.X.	Please select
0.02	1e+0	32	1619814_at	CD712133	-	-	7e-13	At3g09100	mRNA capping enzyme family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1617858_at	CF206233.1	-	-	5e-12	At4g17360	formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase	C.G.	S.X.	Please select
0.02	1e+0	32	1616044_at	CF609467	similar to mRNA capping enzyme family protein	-	7e-13	At3g09100	mRNA capping enzyme family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1615660_at	CF215672	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	1e-51	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	1e-15	83	Arabidopsis thaliana	At4g09012	6240241	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	6e-31	135	Glycine max	Gma.15509.1.S1_at	CF922241	-	-	4e-13	At4g09012	-	C.G.	S.X.	Please select
0.12	1e-11	69	Hordeum vulgare	Contig11272_at	Contig11272	-	-	8e-2	At5g40080	60S ribosomal protein-related	C.G.	S.X.	Please select
0.19	5e-17	89	Oryza sativa	Os02g0617900	9630.m03912	-	Conserved hypothetical protein	9e-1	At2g16580	auxin-responsive protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	1e-22	107	Populus trichocarpa	PtpAffx.5539.2.S1_at	CV266898	hypothetical protein	-	1e-3	At4g09012	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	2e-11	69	Triticum aestivum	Ta.7432.2.S1_at	CA630259	-	-	7e-2	At5g40080	60S ribosomal protein-related	C.G.	S.X.	Please select
0.09	1e-14	79	Zea mays	Zm.3208.1.S1_at	CB816532	hypothetical protein LOC100278608	-	6e-3	At5g40080	60S ribosomal protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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