CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616735_at

Gene name hypothetical protein LOC100257315

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1616735_at CF604749 hypothetical protein LOC100257315 - 1e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) S.X. H.G.
0.91 98.8 1612288_at CB969093 - - 3e-1 At4g09040 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.91 98.8 1606845_at CF212991 hypothetical protein LOC100257315 - 1e+0 At3g52510 - S.X. H.G.
0.71 89.5 1621244_s_at CD797552 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.67 87.9 1617334_s_at CF607954 - - 1e-9 At5g65660 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.63 84.3 1606429_at CF373019 hypothetical protein LOC100251832 - 2e-1 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.9 100.0 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
22.5 100.0 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
20.7 99.9 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
20.5 99.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.7 99.9 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
16.2 99.9 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.5 99.9 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.2 99.8 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.0 99.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
12.2 99.8 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 38 1620825_s_at CB972353 hypothetical protein LOC100253453 - 1e-2 At1g33680 RNA binding / nucleic acid binding C.G. S.X.
0.03 9e-2 36 1619026_s_at CB349994 hypothetical protein LOC100265941 - 3e-10 At3g20800 rcd1-like cell differentiation protein, putative C.G. S.X.
0.03 4e-1 34 1607634_at CF204724.1 - - 2e-9 At5g65660 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 1e+0 32 1622078_at CF201904.1 - - 4e-1 At2g03470 myb family transcription factor / ELM2 domain-containing protein C.G. S.X.
0.03 1e+0 32 1618992_at CB343533 - - 3e-1 At2g31940 unknown protein C.G. S.X.
0.02 1e+0 32 1615086_s_at BQ793914 hypothetical protein LOC100243952 - 3e-33 At2g25110 SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR) C.G. S.X.
0.02 1e+0 32 1614190_at CF207712 - - 4e-1 At5g58090 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 1e+0 32 1613499_at CF204257.1 - - 4e-1 At1g27740 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 1e+0 32 1608586_at CF514688 hypothetical protein LOC100241814 - 4e-18 At4g21960 PRXR1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g50470 835115 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.45978.1.A1_at BI967636 - - 2e-19 At3g57560 aspartate/glutamate/uridylate kinase family protein C.G. S.X.
0.04 4e-2 38 Hordeum vulgare HT08F04u_s_at HT08F04u - - 3e+0 At5g49380 - C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.27109.1.S1_at - - - 0 C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.221165.1.S1_at pmrna37819 hypothetical protein - 6e-2 At1g61590 protein kinase, putative C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.79253.1.S1_at CA719111 - - 3e+0 At4g26701 DNA binding / DNA topoisomerase type I C.G. S.X.
0.03 3e+1 28 Zea mays ZmAffx.563.1.A1_at AI714606 - - 3e+0 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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