Gene omics information

Query gene ID	1616733_s_at
Gene name	hypothetical protein LOC100255975
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1616733_s_at	CB981317	hypothetical protein LOC100255975	-	1e-3	At5g56610	dual specificity protein phosphatase family protein	S.X.	H.G.	Please select
0.80	93.6	AFFX-Vvi-actin-5_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.73	90.8	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	S.X.	H.G.	Please select
0.73	90.8	1614631_at	CB979660	hypothetical protein LOC100254376	-	1e-137	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select
0.67	87.9	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	S.X.	H.G.	Please select
0.67	87.9	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	95.5	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	3e-140	496	1618304_at	CF516833	-	-	9e-2	At4g12500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1620342_at	CF207053.1	O-methyltransferase-like	-	3e-5	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	1e+0	32	1616508_at	CF372645	hypothetical protein LOC100246705	-	1e-4	At5g62390	ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7)	C.G.	S.X.	Please select
0.03	1e+0	32	1607475_s_at	CD012393	O-methyltransferase-like	-	6e-6	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	5e+0	30	1621974_at	CB971118	hypothetical protein LOC100262951	-	6e-1	At3g57750	protein kinase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1619733_at	CB342943	hypothetical protein LOC100243866	-	1e-7	At2g15020	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1616539_s_at	CF515499	hypothetical protein LOC100255081	-	5e-4	At4g01000	ubiquitin family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1616248_at	CF203724.1	-	-	5e+0	At3g47430	PEX11B	C.G.	S.X.	Please select
0.02	5e+0	30	1614862_at	BQ797749	hypothetical protein LOC100265103	-	1e-1	At2g30670	tropinone reductase, putative / tropine dehydrogenase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-3	44	Arabidopsis thaliana	At5g56610	835762	dual specificity protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-10	67	Glycine max	Gma.15515.1.S1_at	BE821840	-	-	2e+0	At3g10185	-	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	EBro08_SQ011_K16_at	EBro08_SQ011_K16	-	-	2e-8	At2g25210	60S ribosomal protein L39 (RPL39A)	C.G.	S.X.	Please select
0.13	5e-7	56	Oryza sativa	Os06g0152000	AU031825	-	Hypothetical protein	5e+0	At5g63660	PDF2.5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.69216.1.S1_a_at	CK104529	hypothetical protein	-	8e-1	At3g24020	disease resistance-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.79423.1.S1_at	CA716094	-	-	3e+0	At5g16800	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.9774.1.A1_at	BQ779271	hypothetical protein LOC100276168	-	5e+0	At2g41997	LCR51 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage