Gene omics information

Query gene ID	1616706_at
Gene name	hypothetical LOC100265979
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.3	1616706_at	CF207563	hypothetical LOC100265979	-	8e-11	At4g12400	stress-inducible protein, putative	S.X.	H.G.	Please select
0.61	83.2	1618545_a_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	S.X.	H.G.	Please select
0.41	58.7	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	S.X.	H.G.	Please select
0.39	54.9	1622731_at	CF403287	hypothetical protein LOC100257054	-	8e-12	At3g55070	-	S.X.	H.G.	Please select
0.36	50.7	1614555_at	CF518554	hypothetical protein LOC100254478	-	2e-13	At5g45300	BMY2 (BETA-AMYLASE 2)	S.X.	H.G.	Please select
0.36	50.7	1613905_at	CF210463	hypothetical protein LOC100254141	-	3e-13	At5g08160	ATPK3	S.X.	H.G.	Please select
0.32	43.1	1613154_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	S.X.	H.G.	Please select
0.24	28.7	1615024_at	CB911127	hypothetical protein LOC100261826	-	2e-27	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	S.X.	H.G.	Please select
0.24	28.7	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	S.X.	H.G.	Please select
0.23	27.5	1613731_at	CF513972	hypothetical protein LOC100248748	-	2e-5	At5g63840	RSW3 (RADIAL SWELLING 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	98.3	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-49	194	1618545_a_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.09	1e-49	194	1613154_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.02	3e-1	34	1621765_at	CD004023	-	-	3e-49	At4g05020	NDB2 (NAD(P)H dehydrogenase B2)	C.G.	S.X.	Please select
0.02	3e-1	34	1609151_at	CD004023	hypothetical protein LOC100241384 /// hypothetical protein LOC100264241	-	3e-49	At4g05020	NDB2 (NAD(P)H dehydrogenase B2)	C.G.	S.X.	Please select
0.04	1e+0	32	1615389_at	CB007528	hypothetical protein LOC100259260	-	8e+0	At5g21125	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	1608995_at	BQ796616	hypothetical protein LOC100248608	-	2e-92	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	C.G.	S.X.	Please select
0.02	5e+0	30	1621774_at	CD715831	-	-	3e-5	At4g14720	PPD2	C.G.	S.X.	Please select
0.02	5e+0	30	1618724_at	BM437885	-	-	9e-24	At1g76490	HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.04	5e+0	30	1618762_s_at	CD799919	hypothetical protein LOC100241025	-	2e+0	At3g24060	self-incompatibility protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	8e-11	67	Arabidopsis thaliana	At4g12400	826849	stress-inducible protein, putative	F:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	4e-53	208	Glycine max	GmaAffx.92481.1.S1_s_at	CF808206	-	-	1e-12	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.14	7e-22	103	Hordeum vulgare	Contig7425_at	Contig7425	-	-	2e-41	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.09	4e-8	59	Oryza sativa	Os.16317.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	3e-45	182	Populus trichocarpa	PtpAffx.4168.3.A1_at	CV234277	-	-	2e-12	At4g12400	stress-inducible protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	3e-10	65	Triticum aestivum	Ta.8679.2.S1_at	CA681251	-	-	2e-5	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.08	9e-18	89	Zea mays	Zm.6353.1.S1_a_at	CA399677	heat shock protein STI	-	2e-14	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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