Gene omics information

Query gene ID	1616688_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1616688_s_at	CB342776	-	-	0	Atcg01050	-	S.X.	H.G.	Please select
0.80	93.6	1613394_at	CB342776	-	-	0	Atcg01050	-	S.X.	H.G.	Please select
0.73	90.8	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	S.X.	H.G.	Please select
0.63	84.3	1613588_at	CA818655	-	-	6e-175	Atcg00730	-	S.X.	H.G.	Please select
0.60	81.9	1608138_s_at	CB342671	-	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.23	27.5	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	96.7	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	2682	1613394_at	CB342776	-	-	0	Atcg01050	-	C.G.	S.X.	Please select
0.24	3e-162	571	1614266_at	BQ792322	-	-	1e-76	Atcg01040	-	C.G.	S.X.	Please select
0.01	1e+0	34	1610769_at	CF211187	hypothetical protein LOC100254516	-	4e-4	At5g54580	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	1619616_at	BQ798767	hypothetical protein LOC100254733	-	3e-9	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.01	5e+0	32	1619005_at	CF206493.1	-	-	3e-14	At5g46410	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.01	5e+0	32	1618972_at	CA817475	hypothetical protein LOC100257554	-	1e+0	At3g23175	lesion inducing protein-related	C.G.	S.X.	Please select
0.01	5e+0	32	1618789_at	CB981489	hypothetical protein LOC100257710	-	4e+0	At5g42330	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	1617760_at	CA818679	-	-	4e+0	Atmg00300	-	C.G.	S.X.	Please select
0.01	5e+0	32	1617588_at	CD798648	hypothetical protein LOC100267586	-	8e-1	At5g43460	lesion inducing protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	1106	Arabidopsis thaliana	Atcg01050	-	-	Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex. Its mRNA is edited at four positions. Translation data is not available for this gene.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	0	686	Glycine max	Gma.11932.1.S1_at	BI095057	-	-	4e-131	Atcg01050	-	C.G.	S.X.	Please select
0.17	3e-67	256	Hordeum vulgare	HV_CEb0010M11f_at	HV_CEb0010M11f	-	-	5e-61	Atcg01060	-	C.G.	S.X.	Please select
0.60	1e-153	545	Oryza sativa	OsAffx.32235.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.44	0	734	Populus trichocarpa	PtpAffx.220623.1.S1_x_at	pmrna37030	-	-	1e-96	Atcg01050	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	7e-33	143	Triticum aestivum	TaAffx.81858.1.S1_at	CA680994	-	-	1e-9	Atcg01050	-	C.G.	S.X.	Please select
0.55	0	787	Zea mays	ZmAffx.1337.1.S1_at	11990232-85	-	-	6e-94	Atcg01050	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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