Gene omics information

Query gene ID	1616667_a_at
Gene name	similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1616667_a_at	CB343534	similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766	-	7e-5	At5g65220	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.63	84.3	1613550_at	CF519120	hypothetical protein LOC100255002	-	1e-1	At5g19240	unknown protein	S.X.	H.G.	Please select
0.55	77.3	1612544_at	BQ793854	hypothetical protein LOC100260093	-	5e-13	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	S.X.	H.G.	Please select
0.55	77.3	1613405_at	CF413625	hypothetical protein LOC100250386	-	5e-28	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	S.X.	H.G.	Please select
0.40	57.7	1606900_at	CA816931	hypothetical protein LOC100254016	-	4e-16	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please select
0.36	50.7	1620854_at	CA818411	hypothetical protein LOC100258321	-	7e-12	At1g29070	ribosomal protein L34 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	98.0	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
4.9	97.9	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
4.6	97.6	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
4.5	97.5	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
4.3	97.2	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
4.2	97.1	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
4.1	96.9	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
4.0	96.7	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
4.0	96.7	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
4.0	96.7	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-24	111	1609413_at	CB350156	-	-	2e+0	At1g01840	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1610706_at	CF568929	-	-	2e-8	At4g34588	CPuORF2 (Conserved peptide upstream open reading frame 2)	C.G.	S.X.	Please select
0.03	1e+0	32	1620328_at	CD010840	-	-	5e+0	At3g59455	-	C.G.	S.X.	Please select
0.02	1e+0	32	1618049_at	CB977039	-	-	4e-1	At1g03430	AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5)	C.G.	S.X.	Please select
0.03	1e+0	32	1616532_at	CD010840	similar to polyprotein	-	5e+0	At3g59455	-	C.G.	S.X.	Please select
0.03	1e+0	32	1616266_at	CF215736	hypothetical protein LOC100254522	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.02	1e+0	32	1612979_at	CF208013	hypothetical protein LOC100243586	-	3e-61	At2g21260	mannose 6-phosphate reductase (NADPH-dependent), putative	C.G.	S.X.	Please select
0.03	1e+0	32	1612384_s_at	CF215736	-	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.02	1e+0	32	1610836_at	CF208642	hypothetical protein LOC100257386	-	5e-10	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	7e-5	48	Arabidopsis thaliana	At5g65220	836647	ribosomal protein L29 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, nucleoid, chloroplast envelope;BOPFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	2e-21	103	Glycine max	Gma.17460.1.S1_s_at	CD400549	-	-	1e-3	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.07	2e-9	61	Hordeum vulgare	Contig9437_at	Contig9437	-	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.10	6e-13	75	Oryza sativa	Os02g0754300	AK068621.1	-	-	9e-1	At4g10465	metal ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	9e-39	161	Populus trichocarpa	Ptp.7024.1.S1_s_at	CV254694	hypothetical protein	-	2e-15	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e-9	63	Triticum aestivum	Ta.614.1.S1_at	CA687330	-	-	9e-2	At3g25400	-	C.G.	S.X.	Please select
0.04	7e+0	30	Zea mays	Zm.8901.1.A1_at	AY107832.1	hypothetical protein LOC100192580	-	9e-3	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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