Gene omics information

Query gene ID	1616662_at
Gene name	hypothetical protein LOC100254645
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1616662_at	CF404703	hypothetical protein LOC100254645	-	2e-34	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	S.X.	H.G.	Please select
0.50	72.7	1608809_at	CF513555	hypothetical protein LOC100267558	-	1e-1	At2g22320	unknown protein	S.X.	H.G.	Please select
0.44	64.1	1620306_at	CF404552	hypothetical protein LOC100267760	-	3e-36	At1g75450	CKX5 (CYTOKININ OXIDASE 5)	S.X.	H.G.	Please select
0.33	45.7	1615430_at	CB974810	-	-	4e+0	At1g05930	DNA binding	S.X.	H.G.	Please select
0.11	11.3	1608099_at	CD800698	brassinosteroid-6-oxidase	-	5e-6	At3g30180	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	S.X.	H.G.	Please select
0.02	3.2	1622454_at	CF413990	hypothetical protein LOC100246221	-	2e-1	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.8	99.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
17.6	99.9	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
17.0	99.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
11.9	99.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.6	99.6	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.4	99.4	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.5	97.5	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43
4.3	97.2	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
4.1	96.9	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.9	96.6	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	2e-71	268	1622073_at	CF404214	-	-	4e+0	At5g02780	In2-1 protein, putative	C.G.	S.X.	Please select
0.07	1e-8	59	1614028_at	CB976052	hypothetical protein LOC100259808	-	1e-55	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select
0.04	4e-2	38	1613997_at	CB970314	hypothetical protein LOC100246545	-	3e-13	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please select
0.02	6e-1	34	1613523_at	CD802137	-	-	4e+0	At5g22180	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	1611968_at	CF204736.1	hypothetical protein LOC100240834	-	2e+0	At5g09490	40S ribosomal protein S15 (RPS15B)	C.G.	S.X.	Please select
0.02	6e-1	34	1606605_s_at	CF605101	hypothetical protein LOC100240834	-	1e+0	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1622114_at	CD798978	hypothetical protein LOC100265981	-	6e-27	At2g45200	GOS12 (GOLGI SNARE 12)	C.G.	S.X.	Please select
0.02	2e+0	32	1614328_at	CF205824.1	-	-	1e+0	At2g03640	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1612759_at	CF513219	hypothetical protein LOC100249495	-	1e-56	At1g09130	ATP-dependent Clp protease proteolytic subunit, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-34	147	Arabidopsis thaliana	At3g63380	825513	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-1	36	Glycine max	Gma.6528.2.S1_at	CA784209	-	-	8e-1	At4g34150	C2 domain-containing protein	C.G.	S.X.	Please select
0.03	7e-2	38	Hordeum vulgare	Contig25293_at	Contig25293	-	-	5e-52	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please select
0.03	4e-3	44	Oryza sativa	Os08g0517200	AK058787.1	-	Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9)	1e-39	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	1e-33	145	Populus trichocarpa	Ptp.7148.1.S1_at	DN488127	-	-	1e-7	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-1	38	Triticum aestivum	TaAffx.7890.1.S1_at	CA645329	-	-	2e-1	At5g03660	unknown protein	C.G.	S.X.	Please select
0.03	4e-3	42	Zea mays	Zm.7379.1.A1_at	CD435322	-	-	4e-2	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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