Gene omics information

Query gene ID	1616654_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1616654_x_at	CF202840.1	-	-	2e+1	At4g01430	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.80	93.6	1610914_at	CF203251.1	-	-	3e+0	At4g04745	unknown protein	S.X.	H.G.	Please select
0.61	83.2	1608259_at	CF205412.1	hypothetical protein LOC100255358	-	2e-6	At5g59520	ZIP2	S.X.	H.G.	Please select
0.57	79.8	1618607_s_at	CB972339	hypothetical protein LOC100255358	-	1e-3	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	S.X.	H.G.	Please select
0.50	72.7	1616954_s_at	BQ794939	hypothetical protein LOC100252003	-	2e+1	At5g04470	SIM (SIAMESE)	S.X.	H.G.	Please select
0.02	3.2	1610689_at	CB969755	hypothetical LOC100252368	-	8e-1	At1g63055	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.6	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
5.5	98.4	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
5.5	98.4	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
5.4	98.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
5.1	98.1	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
4.9	97.9	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
4.8	97.8	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
4.5	97.5	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
4.4	97.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
4.4	97.3	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	6e-135	478	1616954_s_at	BQ794939	hypothetical protein LOC100252003	-	2e+1	At5g04470	SIM (SIAMESE)	C.G.	S.X.	Please select
0.01	1e+0	32	1619470_at	CB004299	-	-	3e-1	At4g19680	IRT2	C.G.	S.X.	Please select
0.03	1e+0	32	1615938_at	CF208490	hypothetical protein LOC100244729	-	8e-51	At5g62700	TUB3	C.G.	S.X.	Please select
0.01	1e+0	32	1615670_at	CB004299	-	-	3e-1	At4g19680	IRT2	C.G.	S.X.	Please select
0.03	1e+0	32	1614511_at	CF213531	hypothetical protein LOC100247831	-	4e-3	At2g32560	F-box family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1619913_at	BQ792292	hypothetical protein LOC100241244 /// hypothetical protein LOC100263338	-	2e-1	At5g47530	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.03	5e+0	30	1617254_at	CD800040	hypothetical protein LOC100256653	-	5e-3	At5g39610	ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)	C.G.	S.X.	Please select
0.02	5e+0	30	1616662_at	CF404703	hypothetical protein LOC100254645	-	2e-34	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	C.G.	S.X.	Please select
0.02	5e+0	30	1616709_s_at	CF205137.1	similar to RNA polymerase beta subunit	-	5e-167	Atcg00170	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+1	30	Arabidopsis thaliana	At4g01430	826685	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	Gma.3469.1.S1_at	BQ628039	-	-	6e-1	At5g08535	D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	HT07L08u_at	HT07L08u	-	-	3e+0	At5g47210	nuclear RNA-binding protein, putative	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	OsAffx.26273.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.72880.1.A1_at	CV272388	hypothetical protein	-	2e-9	At5g41760	nucleotide-sugar transporter family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.108716.1.S1_at	CA684922	-	-	9e-1	At5g19860	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.516.1.A1_at	AI692117	-	-	8e-1	At5g25630	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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