Gene omics information

Query gene ID	1616579_at
Gene name	hypothetical protein LOC100260111
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1616579_at	CF514965	hypothetical protein LOC100260111	-	6e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	S.X.	H.G.	Please select
0.57	79.8	1618259_at	BM436271	hypothetical LOC100245758	-	3e-32	At5g65780	ATBCAT-5	S.X.	H.G.	Please select
0.56	79.4	1619252_at	CF206010.1	hypothetical protein LOC100242409	-	1e-28	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	S.X.	H.G.	Please select
0.50	72.7	1607286_at	CF207311	hypothetical protein LOC100267511	-	3e-69	At3g12150	unknown protein	S.X.	H.G.	Please select
0.47	67.7	1615832_at	BQ792735	hypothetical protein LOC100242360	-	1e-10	At2g24860	chaperone protein dnaJ-related	S.X.	H.G.	Please select
0.43	61.5	1608292_at	CA817093	hypothetical protein LOC100241035	-	7e-30	At5g57690	diacylglycerol kinase	S.X.	H.G.	Please select
0.40	57.7	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	S.X.	H.G.	Please select
0.36	50.7	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.4	99.6	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.0	99.5	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.5	99.4	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.2	99.4	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3	98.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6	97.6	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5	97.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8	96.4	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-23	107	1619228_at	BQ794778	hypothetical protein LOC100248533	-	8e-5	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	C.G.	S.X.	Please select
0.03	1e+0	32	1618895_at	CF514987	-	-	1e+0	At3g11860	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1608527_at	CF515950	hypothetical protein LOC100265888	-	1e-42	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1615342_at	CD006983	-	-	3e-1	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please select
0.03	5e+0	30	1613728_at	CF513606	hypothetical protein LOC100243984	-	1e+0	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	C.G.	S.X.	Please select
0.02	5e+0	30	1613003_at	CA817428	-	-	7e+0	At5g15440	EDL1 (EID1-like 1)	C.G.	S.X.	Please select
0.02	5e+0	30	1611722_at	CD717706	-	-	3e+0	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	C.G.	S.X.	Please select
0.02	5e+0	30	1611554_at	CD006983	hypothetical protein LOC100263620	-	3e-1	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please select
0.02	5e+0	30	1607950_at	CD717706	-	-	3e+0	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	Arabidopsis thaliana	At3g12360	820414	ITN1 (INCREASED TOLERANCE TO NACL)	Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	4e-7	56	Glycine max	Gma.3674.1.S1_at	BI784836	-	-	3e-5	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	C.G.	S.X.	Please select
0.11	3e-5	48	Hordeum vulgare	rbaal35m01_s_at	rbaal35m01	-	-	2e-8	At3g09550	protein binding	C.G.	S.X.	Please select
0.03	3e-8	59	Oryza sativa	Os03g0281000	AK100495.1	-	-	3e-23	At3g09550	protein binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	2e-33	143	Populus trichocarpa	PtpAffx.206606.1.S1_at	pmrna13113	hypothetical protein	-	5e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e-9	63	Triticum aestivum	Ta.4059.1.S1_a_at	BJ263315	-	-	6e-42	At3g09550	protein binding	C.G.	S.X.	Please select
0.04	7e+0	30	Zea mays	ZmAffx.567.1.A1_at	AI714637	hypothetical protein LOC100192551	-	2e-1	At5g50760	auxin-responsive family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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