CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616577_at

Gene name hypothetical protein LOC100261345

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1616577_at BQ792277 hypothetical protein LOC100261345 - 6e+0 At3g54620 BZIP25 (BASIC LEUCINE ZIPPER 25) S.X. H.G.
0.44 64.1 1617090_at CA808721 hypothetical protein LOC100246523 - 6e-2 At4g16210 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) S.X. H.G.
0.40 57.7 1613733_at CB345957 hypothetical protein LOC100243231 - 1e-6 At5g59210 myosin heavy chain-related S.X. H.G.
0.12 12.1 1610777_at CD797701 hypothetical protein LOC100263956 - 2e-42 At3g13670 protein kinase family protein S.X. H.G.
0.06 6.8 1609774_s_at CA817625 hypothetical protein LOC100258211 - 2e-34 At5g45130 RHA1 (RAB HOMOLOG 1) S.X. H.G.
0.04 5.2 1618905_at CB339532 hypothetical protein LOC100245830 - 5e-7 At2g25670 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 98.4 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.2 98.2 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.8 96.4 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5 95.7 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5 95.7 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4 95.5 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287871 Green hard berry C4 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 34 1611465_at CF511524 - - 2e-1 At3g45200 unknown protein C.G. S.X.
0.02 2e+0 32 1620279_at CB923067 hypothetical protein LOC100255680 - 1e+0 At3g06870 proline-rich family protein C.G. S.X.
0.02 2e+0 32 1614408_at CB978599 - - 5e-25 Atcg01130 - C.G. S.X.
0.03 2e+0 32 1614124_at CF515862 - - 4e+0 At5g43245 unknown protein C.G. S.X.
0.02 2e+0 32 1609435_at CF517521 SCUTL1 - 1e-5 At1g75040 PR5 (PATHOGENESIS-RELATED GENE 5) C.G. S.X.
0.02 2e+0 32 1608795_at CF517353 hypothetical LOC100251362 - 2e+0 At3g28857 transcription regulator C.G. S.X.
0.02 7e+0 30 1617783_at CF609864 hypothetical protein LOC100243774 - 1e-13 At1g57680 - C.G. S.X.
0.02 7e+0 30 1615030_at CB350066 similar to EMB2735 (EMBRYO DEFECTIVE 2735) - 1e-16 At5g06240 emb2735 (embryo defective 2735) C.G. S.X.
0.02 7e+0 30 1613025_at CF403382 hypothetical protein LOC100264358 - 1e-25 At3g51160 MUR1 (MURUS 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e+0 32 Arabidopsis thaliana At3g54620 824627 BZIP25 (BASIC LEUCINE ZIPPER 25) bZIP transcription factor-like protein mRNA - - - C.G. S.X.
0.04 2e+0 34 Glycine max HgAffx.17930.1.S1_at CB278460 - - 1e+0 At5g51900 cytochrome P450 family C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HVSMEf0001F23r2_x_at HVSMEf0001F23r2 - - 9e+0 At4g26030 transcription factor C.G. S.X.
0.04 1e-2 42 Oryza sativa Os02g0292900 9630.m01816 - - 8e+0 At5g22270 unknown protein C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.213896.1.S1_at pmrna27097 hypothetical protein - 7e-1 At5g63087 - C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.6192.1.S1_at CA690236 - - 4e+0 At4g29610 cytidine deaminase, putative / cytidine aminohydrolase, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.11189.1.A1_at BM339882 - - 8e-1 At5g26600 catalytic/ pyridoxal phosphate binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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