Gene omics information

Query gene ID	1616571_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1616571_at	CF205416.1	-	-	1e+0	At5g39645	-	S.X.	H.G.	Please select
0.40	57.7	1614088_at	CF208463	hypothetical protein LOC100258145	-	2e-21	At2g39170	unknown protein	S.X.	H.G.	Please select
0.32	43.1	1619771_s_at	CD798243	geranyl diphosphate synthase	-	1e+0	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	S.X.	H.G.	Please select
0.13	13.3	1615765_x_at	CF202835.1	-	-	7e-4	At1g55680	WD-40 repeat family protein	S.X.	H.G.	Please select
0.11	11.3	1622119_s_at	CB915301	hypothetical protein LOC100258911	-	4e-19	At3g04780	-	S.X.	H.G.	Please select
0.06	6.8	1618931_at	CB973378	hypothetical protein LOC100265402	-	2e-31	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	97.7	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
4.3	97.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.9	96.6	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.8	96.4	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
3.8	96.4	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.3	95.2	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
3.3	95.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
3.2	94.9	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
3.0	94.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.74	0	1124	1608178_s_at	CF210114	hypothetical protein LOC100242383	-	5e-19	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.03	4e-1	34	1620415_at	CB972472	hypothetical protein LOC100242363	-	1e+0	At4g24275	-	C.G.	S.X.	Please select
0.03	4e-1	34	1612240_at	CF414518	hypothetical protein LOC100263579	-	4e+0	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1606922_at	CB344152	hypothetical protein LOC100246883	-	6e-12	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please select
0.02	2e+0	32	1622561_at	CF513450	hypothetical protein LOC100264847	-	6e+0	Atmg00620	-	C.G.	S.X.	Please select
0.02	2e+0	32	1621087_at	CF204142.1	hypothetical protein LOC100253234	-	5e+0	Atcg00430	-	C.G.	S.X.	Please select
0.03	2e+0	32	1620574_s_at	CF405646	hypothetical protein LOC100253234	-	4e+0	Atcg00430	-	C.G.	S.X.	Please select
0.03	2e+0	32	1619956_at	CB974049	-	-	2e-1	At3g60540	sec61beta family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619592_at	CF415387	hypothetical protein LOC100255579	-	1e-23	At2g31400	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g39645	5008286	-	Encodes a Defensin-like (DEFL) family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	3e-27	123	Glycine max	GmaAffx.22418.1.S1_at	BU091004	-	-	4e-11	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.10	7e-4	44	Hordeum vulgare	Contig17158_s_at	Contig17158	-	-	7e-2	At5g22180	unknown protein	C.G.	S.X.	Please select
0.03	3e-3	44	Oryza sativa	Os07g0272400	AK102876.1	-	Protein of unknown function DUF500 family protein	2e-11	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-1	38	Populus trichocarpa	PtpAffx.14953.1.S1_at	CV238321	-	-	4e-26	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	6e-3	42	Triticum aestivum	Ta.23036.1.S1_at	CA653214	-	-	1e+0	At4g02950	ubiquitin family protein	C.G.	S.X.	Please select
0.05	2e-1	36	Zea mays	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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