Gene omics information

Query gene ID	1616555_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1616555_s_at	CB343780	-	-	1e+1	At4g35165	unknown protein	S.X.	H.G.	Please select
0.91	98.8	1609184_at	CB342124	hypothetical protein LOC100254366	-	7e-6	At3g14640	CYP72A10	S.X.	H.G.	Please select
0.83	94.6	1619578_at	CB342051	hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392	-	6e-3	At3g14620	CYP72A8	S.X.	H.G.	Please select
0.53	75.2	1617035_s_at	CF205538.1	hypothetical protein LOC100260266	-	1e-10	At2g47180	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	S.X.	H.G.	Please select
0.53	75.2	1614381_at	CD713830	-	-	9e+0	At5g54930	AT hook motif-containing protein	S.X.	H.G.	Please select
0.47	67.7	1608907_s_at	CA809004	hypothetical protein LOC100260266	-	1e-30	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.9	100.0	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
20.0	99.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
19.0	99.9	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
16.4	99.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
15.8	99.9	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
14.8	99.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
12.5	99.8	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
9.7	99.6	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.2	99.1	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
7.1	99.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	32	1622076_at	CB348546	-	-	3e-1	At2g27180	unknown protein	C.G.	S.X.	Please select
0.04	8e-1	32	1612679_at	CF207565	-	-	4e+0	At3g30778	unknown protein	C.G.	S.X.	Please select
0.05	3e+0	30	1621714_at	CF202956.1	-	-	6e+0	At4g27810	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	1617413_at	CD009048	-	-	3e+1	At3g02555	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	1608881_at	CF372579	-	-	2e-1	At4g34690	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	28	1622694_at	CB979125	hypothetical protein LOC100245090	-	2e-28	At3g12760	-	C.G.	S.X.	Please select
0.03	1e+1	28	1622601_at	CB977758	-	-	5e+0	At2g35736	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	28	1622176_s_at	CF413849	hypothetical protein LOC100258362	-	3e-2	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+1	30	Arabidopsis thaliana	At4g35165	829669	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e+0	32	Glycine max	GmaAffx.21787.1.A1_at	AW348555	-	-	6e-1	At5g07580	DNA binding / transcription factor	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	Contig9772_at	Contig9772	-	-	2e-1	At1g55190	PRA7	C.G.	S.X.	Please select
0.03	5e+0	32	Oryza sativa	Os11g0549300	9639.m03124	-	KI domain interacting kinase 1	3e-8	At4g21230	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	Ptp.3780.1.S1_at	DN487961	hypothetical protein	-	1e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.81276.1.S1_at	CA687901	-	-	2e-1	At2g20260	PSAE-2 (photosystem I subunit E-2)	C.G.	S.X.	Please select
0.05	2e+1	28	Zea mays	ZmAffx.1386.1.S1_at	40794996-61	-	-	7e-1	At3g21920	pollen coat receptor kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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