CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616547_at

Gene name hypothetical protein LOC100256265

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1616547_at BQ798895 hypothetical protein LOC100256265 - 5e-21 At5g23230 NIC2 (NICOTINAMIDASE 2) S.X. H.G.
0.15 15.6 1606695_at CF403712 hypothetical protein LOC100247470 - 1e+0 At4g23770 unknown protein S.X. H.G.
0.09 9.4 1619272_at CF373376 hypothetical protein LOC100265908 - 1e-4 At1g29395 COR414-TM1 S.X. H.G.
0.05 6.0 1613680_a_at CB970387 WD repeat 2 - 4e-63 At1g12910 ATAN11 (ANTHOCYANIN11) S.X. H.G.
0.05 6.0 1617445_s_at CF517231 similar to Hsp70 interacting protein/thioredoxin chimera - 1e+0 At1g31020 ATO2 (Arabidopsis thioredoxin o2) S.X. H.G.
0.03 4.2 1613777_at CF404767 - - 1e+0 At3g04430 anac049 (Arabidopsis NAC domain containing protein 49) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 98.6 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
5.5 98.4 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436385 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 32 1616036_at CF513213 hypothetical protein LOC100241363 - 7e-4 At4g23630 BTI1 (VIRB2-INTERACTING PROTEIN 1) C.G. S.X.
0.03 1e+0 32 1615867_at CF513408 - - 7e-5 At4g32551 LUG (LEUNIG) C.G. S.X.
0.03 5e+0 30 1620827_at CB835637 - - 2e-2 At4g30450 glycine-rich protein C.G. S.X.
0.03 5e+0 30 1620664_at CB979614 - - 5e-3 At5g56870 BGAL4 (beta-galactosidase 4) C.G. S.X.
0.03 5e+0 30 1620132_s_at CB922636 hypothetical protein LOC100267077 - 2e-31 At4g15930 microtubule motor C.G. S.X.
0.03 5e+0 30 1619581_at CB980639 - - 4e+0 At4g24130 unknown protein C.G. S.X.
0.03 5e+0 30 1617067_at CB835637 - - 2e-2 At4g30450 glycine-rich protein C.G. S.X.
0.03 5e+0 30 1615479_at CA815857 hypothetical protein LOC100250632 - 2e-5 At1g26690 emp24/gp25L/p24 family protein C.G. S.X.
0.05 5e+0 30 1615613_at CB982655 hypothetical protein LOC100267077 - 2e+0 At5g48680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 5e-21 101 Arabidopsis thaliana At5g23230 832387 NIC2 (NICOTINAMIDASE 2) F:nicotinamidase activity, catalytic activity;P:NAD metabolic process, metabolic process;C:cellular_component unknown;BOAFP - - - C.G. S.X.
0.24 1e-28 127 Glycine max Gma.16023.2.S1_at BU926320 - - 1e-6 At5g23230 NIC2 (NICOTINAMIDASE 2) C.G. S.X.
0.04 3e-2 38 Hordeum vulgare Contig2542_at Contig2542 - - 5e-13 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) C.G. S.X.
0.25 7e-25 115 Oryza sativa OsAffx.26459.1.A1_at - - - 0 C.G. S.X.
0.15 2e-15 83 Populus trichocarpa PtpAffx.3398.2.S1_a_at DN492300 hypothetical protein - 1e-10 At5g23230 NIC2 (NICOTINAMIDASE 2) C.G. S.X.
0.05 7e-2 38 Triticum aestivum TaAffx.71683.1.A1_at CK214068 - - 5e+0 At5g42110 unknown protein C.G. S.X.
0.16 8e-12 69 Zea mays Zm.9212.1.A1_at BM078565 - - 1e-3 At5g23220 NIC3 (NICOTINAMIDASE 3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage