CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616463_at

Gene name hypothetical protein LOC100249922

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1616463_at CF208407 hypothetical protein LOC100249922 - 4e-47 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) S.X. H.G.
0.67 87.9 1619789_at CF608880 hypothetical protein LOC100244542 - 4e+0 At2g26040 Bet v I allergen family protein S.X. H.G.
0.61 83.2 1620623_at CF215757 hypothetical protein LOC100249108 - 4e-1 At5g25090 plastocyanin-like domain-containing protein S.X. H.G.
0.55 77.3 1620834_at CB970590 hypothetical protein LOC100253371 - 4e-1 At5g02520 - S.X. H.G.
0.55 77.3 1617668_at CF514659 hypothetical protein LOC100243346 - 5e-4 At4g11080 high mobility group (HMG1/2) family protein S.X. H.G.
0.50 72.7 1619323_at CF413821 hypothetical protein LOC100264304 - 7e+0 At5g37780 CAM1 (CALMODULIN 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.5 99.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
10.8 99.7 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.6 98.4 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.0 98.0 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.0 98.0 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.9 97.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
4.1 96.9 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 36 1622584_at CF206482.1 hypothetical protein LOC100248604 - 3e-26 At2g16740 UBC29 (ubiquitin-conjugating enzyme 29) C.G. S.X.
0.04 1e-1 36 1622069_at CD801772 - - 2e+0 At1g74340 dolichol phosphate-mannose biosynthesis regulatory protein-related C.G. S.X.
0.03 1e-1 36 1620196_at CF602908 hypothetical protein LOC100260029 - 2e-2 At2g45590 protein kinase family protein C.G. S.X.
0.03 1e-1 36 1612369_at CF568992 - - 4e+0 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.02 4e-1 34 1622694_at CB979125 hypothetical protein LOC100245090 - 2e-28 At3g12760 - C.G. S.X.
0.02 4e-1 34 1622594_at CF216086 hypothetical protein LOC100266248 - 2e-6 At1g68490 unknown protein C.G. S.X.
0.02 4e-1 34 1622541_at CB342787 hypothetical protein LOC100258249 - 4e-35 At5g12190 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 4e-1 34 1621570_at CB339408 hypothetical protein LOC100255693 - 4e-5 At2g34070 unknown protein C.G. S.X.
0.02 4e-1 34 1621239_at CF517123 - - 2e+0 At4g13266 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 4e-47 188 Arabidopsis thaliana At3g20060 821545 UBC19 (ubiquitin-conjugating enzyme19) Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus. - - - C.G. S.X.
0.23 1e-20 101 Glycine max Gma.6633.2.A1_at AI442440 - - 3e-51 At1g50490 UBC20 (ubiquitin-conjugating enzyme 20) C.G. S.X.
0.18 1e-2 40 Hordeum vulgare Contig9411_at Contig9411 - - 8e-12 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) C.G. S.X.
0.10 2e-4 48 Oryza sativa Os01g0273100 AK105320.1 - Cyclin-selective ubiquitin carrier protein E2-C 3e-5 At1g50490 UBC20 (ubiquitin-conjugating enzyme 20) C.G. S.X.
0.49 3e-76 286 Populus trichocarpa Ptp.5502.2.S1_at CV248616 hypothetical protein - 1e-74 At1g50490 UBC20 (ubiquitin-conjugating enzyme 20) C.G. S.X.
0.09 2e-5 50 Triticum aestivum Ta.3436.1.S1_at BQ838271 - - 1e-11 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) C.G. S.X.
0.10 7e-10 63 Zea mays Zm.14028.3.A1_at BG841009 hypothetical protein LOC100192735 - 8e-6 At1g50490 UBC20 (ubiquitin-conjugating enzyme 20) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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