CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616450_at

Gene name hypothetical protein LOC100264578

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1616450_at BQ797532 hypothetical protein LOC100264578 - 3e-23 At1g48790 mov34 family protein S.X. H.G.
0.61 83.2 1621965_s_at BQ793756 hypothetical protein LOC100247098 - 8e-36 At5g23540 26S proteasome regulatory subunit, putative S.X. H.G.
0.50 72.7 1621111_at BQ798687 hypothetical protein LOC100254821 - 2e+0 At4g33145 unknown protein S.X. H.G.
0.44 64.1 1621155_at BQ794745 hypothetical protein LOC100248478 - 8e-34 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) S.X. H.G.
0.40 57.7 1613432_at CF516959 hypothetical protein LOC100244217 - 1e-15 At1g67680 7S RNA binding S.X. H.G.
0.22 25.6 1608865_at CF514121 hypothetical protein LOC100259987 - 7e-90 At5g38480 GRF3 (GENERAL REGULATORY FACTOR 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 94.6 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 4e-10 63 1615472_at CB346188 hypothetical LOC100243131 - 7e-11 At1g48790 mov34 family protein C.G. S.X.
0.02 4e-1 34 1608789_at CF207355 hypothetical protein LOC100258912 - 2e-16 At2g47070 SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1) C.G. S.X.
0.01 2e+0 32 1621699_at CF212982 hypothetical protein LOC100248753 - 2e-35 At5g09260 VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2) C.G. S.X.
0.03 2e+0 32 1621095_at CF403412 - - 9e-1 At3g29230 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 2e+0 32 1613974_at CF207506 similar to OSJNBa0064D20.9 - 1e-50 At5g23575 transmembrane protein, putative C.G. S.X.
0.03 2e+0 32 1609858_at CF517363 hypothetical protein LOC100240985 - 4e+0 At5g02090 unknown protein C.G. S.X.
0.02 6e+0 30 1621658_at CD720716 - - 1e+0 At5g51090 unknown protein C.G. S.X.
0.02 6e+0 30 1620694_at CF513121 hypothetical protein LOC100246616 - 3e-138 At4g16155 dihydrolipoyl dehydrogenase C.G. S.X.
0.03 6e+0 30 1620604_at CF568828 - - 3e+0 At4g38401 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-23 109 Arabidopsis thaliana At1g48790 841301 mov34 family protein F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPO - - - C.G. S.X.
0.40 2e-40 167 Glycine max Gma.3664.1.S1_at BU551064 - - 1e-50 At1g48790 mov34 family protein C.G. S.X.
0.23 2e-13 75 Hordeum vulgare Contig13456_at Contig13456 - - 2e-9 At1g48790 mov34 family protein C.G. S.X.
0.12 3e-3 44 Oryza sativa Os01g0338200 AK068083.1 - Mov34/MPN/PAD-1 family protein 1e+0 At4g16144 - C.G. S.X.
0.42 4e-63 242 Populus trichocarpa PtpAffx.49746.1.A1_at CV226295 hypothetical protein - 4e-57 At1g48790 mov34 family protein C.G. S.X.
0.08 6e-9 61 Triticum aestivum Ta.5359.1.S1_at BJ238105 - - 3e-11 At1g48790 mov34 family protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.9255.2.S1_a_at AY107426.1 hypothetical protein LOC100191322 - 1e+0 At1g46768 RAP2.1 (related to AP2 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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