Gene omics information

Query gene ID	1616420_at
Gene name	hypothetical protein LOC100244821
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	79.4	1616420_at	CF515326	hypothetical protein LOC100244821	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.88	95.4	1613860_s_at	CF512506	cyc07	-	6e-38	At3g04840	40S ribosomal protein S3A (RPS3aA)	S.X.	H.G.	Please select
0.80	93.6	1608096_at	CB978907	hypothetical protein LOC100264515	-	6e-59	At5g39850	40S ribosomal protein S9 (RPS9C)	S.X.	H.G.	Please select
0.80	93.6	1610560_at	BQ797613	hypothetical protein LOC100258347	-	7e-52	At3g47370	40S ribosomal protein S20 (RPS20B)	S.X.	H.G.	Please select
0.67	87.9	1610092_at	BQ794603	hypothetical protein LOC100250286	-	2e-18	At5g18380	40S ribosomal protein S16 (RPS16C)	S.X.	H.G.	Please select
0.59	80.6	1610095_s_at	CF516594	hypothetical protein LOC100257471	-	9e-49	At5g23900	60S ribosomal protein L13 (RPL13D)	S.X.	H.G.	Please select
0.58	79.8	1620069_s_at	CB969496	hypothetical protein LOC100248991	-	9e-51	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	S.X.	H.G.	Please select
0.57	79.8	1621022_at	BQ794425	hypothetical protein LOC100255295	-	7e-43	At3g02080	40S ribosomal protein S19 (RPS19A)	S.X.	H.G.	Please select
0.50	72.7	1610193_at	CF214569	hypothetical protein LOC100242819	-	1e-53	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	93.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	0	1281	1618385_at	CF518525	hypothetical protein LOC100246711	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.61	0	1168	1620764_a_at	CB348714	hypothetical protein LOC100261589	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.44	0	670	1615105_s_at	CF568901	hypothetical protein LOC100256979	-	0	At1g07930	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.04	1e-3	44	1615648_at	CA809557	-	-	6e-2	At1g07930	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.01	3e-1	36	1621717_at	CF518880	-	-	4e+0	At5g03495	nucleotide binding	C.G.	S.X.	Please select
0.01	1e+0	34	1617247_at	CB973852	hypothetical protein LOC100264539	-	2e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	C.G.	S.X.	Please select
0.01	1e+0	34	1611434_at	CF603154	hypothetical protein LOC100247199	-	5e-16	At4g24220	VEP1 (VEIN PATTERNING 1)	C.G.	S.X.	Please select
0.01	5e+0	32	1620475_at	CF205959.1	similar to MAP1D (METHIONINE AMINOPEPTIDASE 1D); metalloexopeptidase	-	7e-74	At4g37040	MAP1D (METHIONINE AMINOPEPTIDASE 1D)	C.G.	S.X.	Please select
0.01	5e+0	32	1619946_at	BQ800369	hypothetical protein LOC100256554	-	8e-3	At1g79770	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	1116	Arabidopsis thaliana	At1g07920	837307	elongation factor 1-alpha / EF-1-alpha	F:calmodulin binding, translation elongation factor activity;P:response to cadmium ion;C:mitochondrion, nucleolus, plasma membrane, chloroplast, membrane;BMOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.62	0	1033	Glycine max	Gma.17616.1.S1_at	AW568275	-	-	0	At5g60390	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.65	0	1071	Hordeum vulgare	Contig397_x_at	Contig397	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.59	0	817	Oryza sativa	Os03g0177400	AK103738.1	-	EF-1 alpha	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.62	0	977	Populus trichocarpa	PtpAffx.291.1.A1_x_at	CV271058	hypothetical protein	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	0	872	Triticum aestivum	Ta.659.4.S1_a_at	CD878208	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.61	0	999	Zea mays	Zm.3157.3.A1_at	CK347593	elongation factor 1-alpha	-	0	At1g07930	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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