CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616416_at

Gene name hypothetical protein LOC100251243

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 90.8 1616416_at CB349840 hypothetical protein LOC100251243 - 7e+0 At3g43740 leucine-rich repeat family protein S.X. H.G.
0.44 64.1 1621260_at BQ797265 - - 3e-1 At4g30630 unknown protein S.X. H.G.
0.22 25.6 1612983_at CB344129 hypothetical protein LOC100249094 - 1e-1 At3g15790 MBD11 S.X. H.G.
0.17 18.2 1616682_at CF512457 hypothetical protein LOC100266059 - 9e-37 At4g18030 dehydration-responsive family protein S.X. H.G.
0.17 18.2 1616802_s_at CF200896.1 - - 2e+0 At2g43060 transcription factor S.X. H.G.
0.14 14.4 1620387_at CD719602 hypothetical protein LOC100260954 - 2e-30 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 97.5 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.6 96.0 GSM147712 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 41
3.5 95.7 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.5 95.7 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
3.3 95.2 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
3.3 95.2 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.0 94.2 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
3.0 94.2 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.9 93.8 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-20 97 1621724_at CB341760 - - 3e+0 At5g25560 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.16 1e-20 97 1617498_s_at CB341760 - - 3e+0 At5g25560 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.24 4e-20 95 1613158_at CB349843 - - 9e-36 Atmg00160 - C.G. S.X.
0.14 2e-19 93 1618560_at CB348377 - - 4e-3 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
0.17 2e-19 93 1609617_at CB345864 - - 4e-2 At3g49845 - C.G. S.X.
0.16 2e-19 93 1607564_at CB350061 UPF0497 membrane protein 4 - 1e+1 At5g41530 - C.G. S.X.
0.16 2e-19 93 1606761_s_at CB350061 UPF0497 membrane protein 4 - 1e+1 At5g41530 - C.G. S.X.
0.16 1e-17 87 1613246_at CB339467 - - 2e+0 At2g43871 unknown protein C.G. S.X.
0.13 1e-17 87 1608716_at CB340251 - - 1e+0 At3g04320 endopeptidase inhibitor C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e+0 30 Arabidopsis thaliana At3g43740 823485 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA - - - C.G. S.X.
0.08 1e-2 40 Glycine max Gma.14303.1.S1_at CA852396 - - 2e+0 At5g09990 PROPEP5 (Elicitor peptide 5 precursor) C.G. S.X.
0.06 1e+1 28 Hordeum vulgare HS04L14u_at HS04L14u - - 2e+0 At2g21237 unknown protein C.G. S.X.
0.04 1e+1 30 Oryza sativa Os06g0601500 CA764046 - ab initio prediction with EST support 1e-9 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.12 5e-17 87 Populus trichocarpa PtpAffx.129204.1.S1_at BU821417 - - 8e-2 At1g21670 - C.G. S.X.
0.07 2e+0 32 Triticum aestivum Ta.11413.1.A1_at BQ170050 - - 3e+0 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) C.G. S.X.
0.05 1e+1 28 Zea mays Zm.10817.5.A1_x_at CD447320 zein protein 3 /// hypothetical protein LOC100038317 /// z1C alpha zein protein /// z1C alpha zein protein /// hypothetical protein LOC100275744 /// hypothetical protein LOC100279022 - 2e+1 At5g49448 CPuORF4 (Conserved peptide upstream open reading frame 4) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage