CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616407_at

Gene name hypothetical protein LOC100250971

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1616407_at CD715829 hypothetical protein LOC100250971 - 7e-9 At1g52510 hydrolase, alpha/beta fold family protein S.X. H.G.
0.40 57.7 1621958_at CF203054.1 hypothetical protein LOC100263890 - 4e-6 At3g12685 - S.X. H.G.
0.38 53.6 1610420_at CA816989 hypothetical protein LOC100263772 - 6e-30 At1g73060 unknown protein S.X. H.G.
0.13 13.3 1620789_s_at CF414942 hypothetical protein LOC100249845 - 8e-1 At5g22520 unknown protein S.X. H.G.
0.07 7.8 1616930_at CA809522 hypothetical protein LOC100248423 - 3e-14 At5g58260 - S.X. H.G.
0.07 7.8 1612153_at CA817275 hypothetical protein LOC100254186 - 7e+0 At5g39700 MYB89 (myb domain protein 89) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 98.6 GSM147679 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 8
5.7 98.5 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
5.3 98.2 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
5.1 98.1 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
4.9 97.9 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
4.8 97.8 GSM147698 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 27
4.8 97.8 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7 97.7 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
4.6 97.6 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
4.5 97.5 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1481 1612605_at CD715829 - - 7e-9 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 3e-2 38 1613824_at CB340638 - - 9e-12 At5g67370 unknown protein C.G. S.X.
0.04 4e-1 34 1612348_x_at CF206007.1 - - 2e-2 At5g23903 unknown protein C.G. S.X.
0.03 4e-1 34 1612322_at CB003625 hypothetical LOC100257639 - 1e+0 At5g13181 unknown protein C.G. S.X.
0.01 4e-1 34 1612063_at CB002186 - - 3e+0 At1g77830 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 4e-1 34 1610489_at CF206007.1 - - 2e-2 At5g23903 unknown protein C.G. S.X.
0.03 4e-1 34 1609793_at BQ792585 hypothetical protein LOC100245778 - 3e-1 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.01 4e-1 34 1608280_at CB002186 - - 3e+0 At1g77830 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 4e-1 34 1607173_s_at CF206007.1 hypothetical protein LOC100255611 - 2e-2 At5g23903 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 7e-9 61 Arabidopsis thaliana At1g52510 841682 hydrolase, alpha/beta fold family protein F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFA - - - C.G. S.X.
0.19 1e-35 151 Glycine max Gma.4553.1.A1_at BU081133 - - 1e-48 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.06 8e-4 44 Hordeum vulgare Contig10144_s_at Contig10144 - - 1e-13 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.12 2e-29 131 Oryza sativa Os04g0644600 AK099966.1 - Epoxide hydrolase family protein 4e-21 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.48 7e-65 248 Populus trichocarpa PtpAffx.112731.1.A1_at CV239317 - - 2e-18 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.10890.3.S1_a_at CA638734 - - 7e-2 At1g78050 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.1456.1.S1_at 11990232-23 Photosystem I assembly protein ycf3 - 2e-116 Atcg00360 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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