CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616390_at

Gene name hypothetical protein LOC100248042

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1616390_at CF211469 hypothetical protein LOC100248042 - 1e-41 At3g13120 30S ribosomal protein S10, chloroplast, putative S.X. H.G.
0.83 94.6 1621569_at CD801894 hypothetical protein LOC100257626 - 4e-7 At3g27850 RPL12-C (ribosomal protein l12-c) S.X. H.G.
0.80 93.6 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) S.X. H.G.
0.77 92.3 1614138_at CA815957 hypothetical protein LOC100254839 - 3e-14 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative S.X. H.G.
0.67 87.9 1620854_at CA818411 hypothetical protein LOC100258321 - 7e-12 At1g29070 ribosomal protein L34 family protein S.X. H.G.
0.50 72.7 1622193_at CF208331 hypothetical protein LOC100265325 - 2e-35 At5g30510 RPS1 (RIBOSOMAL PROTEIN S1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.1 98.1 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
5.0 98.0 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
4.8 97.8 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
4.6 97.6 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
4.6 97.6 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
4.4 97.3 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
4.0 96.7 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
3.9 96.6 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
3.9 96.6 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.7 96.2 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-55 214 1611863_at CB344118 - - 2e-1 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.03 5e-1 34 1614075_at BQ796544 hypothetical protein LOC100249048 - 2e+0 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.01 5e-1 34 1608000_at CF517275 - - 0 Atcg00270 - C.G. S.X.
0.02 2e+0 32 1622497_at CB003673 - - 5e+0 At5g50480 NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6) C.G. S.X.
0.02 2e+0 32 1621584_at CF203397.1 - - 2e+0 At2g33870 ArRABA1h (Arabidopsis Rab GTPase homolog A1h) C.G. S.X.
0.02 2e+0 32 1621513_at CB001476 - - 8e-39 At4g36390 radical SAM domain-containing protein / TRAM domain-containing protein C.G. S.X.
0.02 2e+0 32 1618659_at CB003673 - - 5e+0 At5g50480 NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6) C.G. S.X.
0.02 2e+0 32 1615848_at CF214849 hypothetical protein LOC100250419 - 2e-3 At2g21500 protein binding / zinc ion binding C.G. S.X.
0.02 2e+0 32 1615260_at CF372907 similar to FAD-binding domain-containing protein - 4e-4 At1g32310 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-41 171 Arabidopsis thaliana At3g13120 820500 30S ribosomal protein S10, chloroplast, putative F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF - - - C.G. S.X.
0.27 4e-48 192 Glycine max Gma.3588.1.S1_at CD408984 - - 2e-52 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
0.14 4e-18 91 Hordeum vulgare Contig9806_at Contig9806 - - 2e-33 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
0.29 1e-18 95 Oryza sativa Os03g0196800 AK058535.1 - Cyanelle 30S ribosomal protein S10 1e-22 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
0.31 2e-68 260 Populus trichocarpa Ptp.6616.2.S1_at CV242059 hypothetical protein - 5e-47 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
0.09 3e-2 40 Triticum aestivum TaAffx.132271.3.S1_at CA630053 - - 2e-1 At5g46780 VQ motif-containing protein C.G. S.X.
0.04 3e+0 32 Zea mays Zm.7289.1.A1_at AY108103.1 - - 2e-4 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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