CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616331_at

Gene name hypothetical protein LOC100261989

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 77.3 1616331_at CF212969 hypothetical protein LOC100261989 - 6e-25 At3g08890 unknown protein S.X. H.G.
0.60 81.9 1614817_at CB970028 hypothetical protein LOC100267905 - 2e-12 At4g33060 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein S.X. H.G.
0.44 64.1 1609898_at CF404373 hypothetical protein LOC100265588 - 7e-11 At5g58575 - S.X. H.G.
0.43 61.5 1619569_at CF211443 hypothetical protein LOC100250036 - 2e-30 At2g26590 adhesion regulating molecule family S.X. H.G.
0.43 61.5 1622714_at BQ796372 hypothetical protein LOC100254120 - 2e-12 At2g30880 pleckstrin homology (PH) domain-containing protein S.X. H.G.
0.31 41.3 1620109_s_at BQ796928 hypothetical protein LOC100243583 - 2e+0 At3g57930 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.3 90.7 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.1 89.1 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.0 88.2 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 38 1620402_at CB977030 hypothetical protein LOC100243378 - 6e-3 At2g03350 unknown protein C.G. S.X.
0.02 6e-1 34 1622062_at CB340908 - - 3e+0 At1g64355 unknown protein C.G. S.X.
0.02 6e-1 34 1611915_at BM438116 hypothetical protein LOC100257368 - 2e-15 At5g42620 metalloendopeptidase/ zinc ion binding C.G. S.X.
0.01 2e+0 32 1621227_at CA809172 hypothetical LOC100267178 - 7e-7 At1g51410 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.02 2e+0 32 1619169_at BQ793912 hypothetical protein LOC100251399 - 3e-20 At2g35780 scpl26 (serine carboxypeptidase-like 26) C.G. S.X.
0.02 2e+0 32 1610882_s_at CF371951 hypothetical protein LOC100249096 - 1e-12 At2g20100 ethylene-responsive family protein C.G. S.X.
0.02 2e+0 32 1610083_at CB980605 - - 2e+0 At2g15450 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 2e+0 32 1609587_at CF202068.1 - - 5e-9 At1g32220 binding / catalytic/ coenzyme binding C.G. S.X.
0.01 9e+0 30 1622595_at BQ795068 - - 4e-3 At3g56860 UBP1 interacting protein 2a (UBA2a) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 6e-25 115 Arabidopsis thaliana At3g08890 820038 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.46 2e-41 171 Glycine max Gma.994.1.A1_at BE657772 - - 2e-12 At5g01610 unknown protein C.G. S.X.
0.15 2e-5 50 Hordeum vulgare Contig8069_at Contig8069 - - 4e-7 At5g01610 unknown protein C.G. S.X.
0.20 1e-12 75 Oryza sativa Os05g0346400 AK102727.1 - Protein of unknown function DUF538 family protein 2e-6 At5g01610 unknown protein C.G. S.X.
0.41 1e-57 224 Populus trichocarpa Ptp.656.1.S1_a_at CV246916 hypothetical protein - 3e-27 At3g08890 unknown protein C.G. S.X.
0.25 2e-9 63 Triticum aestivum Ta.1483.1.S1_a_at BQ162492 - - 2e-3 At5g01610 unknown protein C.G. S.X.
0.18 1e-14 79 Zea mays Zm.1837.1.S1_a_at CF014756 cp protein - 1e-2 At5g01610 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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