Gene omics information

Query gene ID	1616302_at
Gene name	ripening-related protein-like
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1616302_at	CB912509	ripening-related protein-like	-	4e-11	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.80	93.6	1606722_at	AF440310.1	actin depolymerizing factor	-	1e-19	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	S.X.	H.G.	Please select
0.50	72.7	1622639_at	CA810871	hypothetical protein LOC100254126	-	1e-4	At1g20440	COR47 (COLD-REGULATED 47)	S.X.	H.G.	Please select
0.47	67.7	1615750_at	CD800994	hypothetical protein LOC100261431	-	2e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.42	60.1	1621508_at	CB005665	hypothetical protein LOC100260203	-	3e-20	At5g35180	phosphoinositide binding	S.X.	H.G.	Please select
0.33	45.7	1621490_at	CF212781	hypothetical protein LOC100256024	-	4e-3	At5g48350	nucleic acid binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.6	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.1	99.5	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.4	99.4	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.3	99.4	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.3	99.4	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.9	99.3	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.7	99.3	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.7	99.3	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.1	99.1	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.0	99.1	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-22	105	1609963_at	CF514599	hypothetical protein LOC100245055	-	9e-8	At5g59480	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.06	3e-12	71	1616752_at	CF510564	hypothetical protein LOC100245055	-	4e+0	At5g59490	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.02	3e-3	42	1622558_at	CF512488	hypothetical protein LOC100243988	-	1e+0	Atcg00270	-	C.G.	S.X.	Please select
0.02	3e-3	42	1617457_at	CD012455	hypothetical protein LOC100267543	-	5e+0	At5g02240	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please select
0.02	3e-3	42	1617311_at	CB344329	hypothetical protein LOC100257045	-	1e-16	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	C.G.	S.X.	Please select
0.02	3e-3	42	1615919_s_at	CB339385	hypothetical protein LOC100258771	-	2e-2	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	C.G.	S.X.	Please select
0.02	3e-3	42	1613640_at	CD012455	-	-	5e+0	At5g02240	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please select
0.02	3e-3	42	1607172_at	CF202914.1	-	-	2e-1	At5g14790	binding	C.G.	S.X.	Please select
0.02	3e-3	42	1606656_at	CF212763	hypothetical protein LOC100262729	-	1e-1	At4g22460	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	4e-11	69	Arabidopsis thaliana	At5g02230	831784	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.45	8e-66	252	Glycine max	Gma.5513.1.S1_at	AW310453	-	-	3e-15	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.06	1e-3	44	Hordeum vulgare	Contig3981_at	Contig3981	-	-	2e+0	At5g59480	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.11	8e-5	50	Oryza sativa	Os03g0273800	AK067356.1	-	Pyrimidine 5-nucleotidase family protein	8e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.37	4e-52	206	Populus trichocarpa	PtpAffx.2655.3.S1_a_at	CN524159	hypothetical protein	-	4e-10	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	1e-11	71	Triticum aestivum	Ta.14491.1.S1_at	BJ287158	-	-	3e-6	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.08	5e-6	52	Zea mays	Zm.8941.1.A1_at	BM334004	hypothetical protein LOC100273259	-	2e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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