Gene omics information

Query gene ID	1616292_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	77.3	1616292_at	CF209464	-	-	2e+0	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.46	66.5	1607695_at	CF208550	-	-	2e-9	At1g15880	GOS11 (golgi snare 11)	S.X.	H.G.	Please select
0.44	64.1	1607491_at	CF202496.1	-	-	3e+0	At4g10465	metal ion binding	S.X.	H.G.	Please select
0.36	50.7	1617825_s_at	CF205420.1	-	-	3e-23	At1g15880	GOS11 (golgi snare 11)	S.X.	H.G.	Please select
0.33	45.7	1607563_at	CF203757.1	-	-	7e-49	At5g61510	NADP-dependent oxidoreductase, putative	S.X.	H.G.	Please select
0.31	41.3	1621710_at	CF201680.1	-	-	3e-1	At1g59690	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	98.3	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
4.4	97.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
4.1	96.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.9	96.6	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
3.9	96.6	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.8	96.4	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	1621876_at	BQ798834	hypothetical protein LOC100253321	-	7e-2	At5g50540	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1621386_at	CF510917	-	-	2e+0	At2g06667	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1621311_at	CB343786	hypothetical protein LOC100262808	-	5e-18	At5g08400	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1620762_at	CA816764	-	-	4e+0	At5g19473	-	C.G.	S.X.	Please select
0.02	2e+0	32	1619396_at	BM437601	hypothetical protein LOC100265576	-	1e-10	At5g44600	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1615556_at	CB969107	hypothetical protein LOC100256985	-	5e-17	At2g28680	cupin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1615584_at	BM437601	-	-	1e-10	At5g44600	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614887_at	CB977736	-	-	1e+0	At5g66700	HB53	C.G.	S.X.	Please select
0.01	2e+0	32	1613896_at	CA818837	hypothetical protein LOC100258695	-	5e-5	At1g18880	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At5g19740	832094	peptidase M28 family protein	F:dipeptidase activity;P:proteolysis;C:vacuole;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-8	59	Glycine max	GmaAffx.84404.1.S1_at	BG238613	-	-	4e-6	At4g07670	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	HVSMEa0003C06r2_x_at	HVSMEa0003C06r2	-	-	5e-2	At1g35420	dienelactone hydrolase family protein	C.G.	S.X.	Please select
0.04	1e-3	46	Oryza sativa	Os03g0790600	AK103648.1	-	Peptidase M28 domain containing protein	1e-15	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.219142.1.S1_at	pmrna34976	cytochrome P450	-	7e-1	At2g37780	DC1 domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-5	50	Triticum aestivum	TaAffx.14777.1.A1_at	CA736788	-	-	1e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.1112.1.A1_s_at	AW231401	-	-	7e-13	Atcg00040	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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