CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616247_at

Gene name hypothetical protein LOC100257808

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1616247_at CF414434 hypothetical protein LOC100257808 - 4e-1 At1g15920 CCR4-NOT transcription complex protein, putative S.X. H.G.
0.67 87.9 1613382_at CA817041 hypothetical protein LOC100257375 - 4e-13 At1g06690 aldo/keto reductase family protein S.X. H.G.
0.63 84.3 1612433_at CB344997 hypothetical protein LOC100260970 - 1e-9 At5g11840 unknown protein S.X. H.G.
0.60 81.9 1620660_at CF517134 hypothetical protein LOC100259089 - 6e-10 At5g07020 proline-rich family protein S.X. H.G.
0.50 72.7 1615069_at CA815055 hypothetical protein LOC100257375 - 5e-44 At1g06690 aldo/keto reductase family protein S.X. H.G.
0.42 60.1 1617311_at CB344329 hypothetical protein LOC100257045 - 1e-16 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) S.X. H.G.
0.31 41.3 1608611_at CF216106 hypothetical protein LOC100240873 - 2e-25 At2g48070 RPH1 (RESISTANCE TO PHYTOPHTHORA 1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.1 99.8 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
13.0 99.8 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
10.2 99.6 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
9.0 99.5 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
8.5 99.4 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
8.2 99.4 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
8.1 99.4 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
7.5 99.2 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
7.1 99.1 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
6.9 99.1 GSM147703 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 32
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 34 1620784_at CD011068 hypothetical protein LOC100240987 - 2e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) C.G. S.X.
0.03 1e-1 34 1608184_at CD011068 - - 2e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) C.G. S.X.
0.03 5e-1 32 1617376_at BQ792638 hypothetical protein LOC100250911 - 2e-3 At4g12760 unknown protein C.G. S.X.
0.02 5e-1 32 1611248_at CD797306 hypothetical protein LOC100241262 - 6e-54 At5g56130 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.04 5e-1 32 1608048_at CF372182 - - 2e-2 At3g09032 unknown protein C.G. S.X.
0.05 2e+0 30 1620731_at CB340492 hypothetical protein LOC100255501 - 1e+0 At1g49840 unknown protein C.G. S.X.
0.04 2e+0 30 1619111_s_at CF373818 hypothetical protein LOC100246882 /// hypothetical protein LOC100258868 /// hypothetical protein LOC100253717 - 6e-2 At3g13660 disease resistance response C.G. S.X.
0.02 2e+0 30 1617448_at BQ795936 hypothetical protein LOC100253724 - 5e-51 At3g15020 malate dehydrogenase (NAD), mitochondrial, putative C.G. S.X.
0.04 2e+0 30 1616417_at CB975222 hypothetical protein LOC100257171 - 2e-2 At4g21610 LOL2 (LSD ONE LIKE 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 34 Arabidopsis thaliana At1g15920 838162 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF - - - C.G. S.X.
0.05 6e-1 34 Glycine max PsAffx.psZS014xF04f_s_at PsAffx.psZS014xF04f - - 6e-2 At1g20090 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) C.G. S.X.
0.04 8e-1 32 Hordeum vulgare Contig24068_at Contig24068 - - 2e-1 At4g33800 unknown protein C.G. S.X.
0.06 8e-1 34 Oryza sativa OsAffx.19326.1.S1_at - - - 0 C.G. S.X.
0.07 6e-1 34 Populus trichocarpa PtpAffx.211987.1.S1_at pmrna23540 hypothetical protein - 7e-1 At5g47890 NADH-ubiquinone oxidoreductase B8 subunit, putative C.G. S.X.
0.05 2e+0 32 Triticum aestivum TaAffx.81606.1.S1_at CA684092 - - 3e+0 At5g14510 armadillo/beta-catenin repeat family protein C.G. S.X.
0.04 1e+1 28 Zea mays ZmAffx.890.1.A1_at AI770846 - - 3e+0 At5g37240 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage