CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616242_at

Gene name hypothetical protein LOC100263350

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 83.2 1616242_at CF213196 hypothetical protein LOC100263350 - 2e-1 At4g18500 unknown protein S.X. H.G.
0.64 84.7 1612774_at CF210198 hypothetical protein LOC100261536 - 2e+0 At5g40900 unknown protein S.X. H.G.
0.63 84.3 1620897_at CF603365 similar to F-box-containing protein 2 - 3e-4 At1g06110 SKIP16 (SKP1/ASK-interacting protein 16) S.X. H.G.
0.50 72.7 1614708_at CF511068 hypothetical protein LOC100248174 - 2e-55 At5g23450 ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1) S.X. H.G.
0.50 72.7 1614838_at CB977099 hypothetical protein LOC100244335 - 1e-4 At1g43640 AtTLP5 (TUBBY LIKE PROTEIN 5) S.X. H.G.
0.42 60.1 1619392_at CF513478 hypothetical protein LOC100259847 - 4e+0 At3g24060 self-incompatibility protein-related S.X. H.G.
0.39 54.9 1607886_at CF604620 hypothetical protein LOC100255368 - 1e-9 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
0.38 53.6 1616106_at CB970099 hypothetical protein LOC100257573 - 1e+0 At1g09935 phosphoglycerate/bisphosphoglycerate mutase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 97.9 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 34 1617341_s_at CF212973 hypothetical protein LOC100262769 - 1e+0 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative C.G. S.X.
0.03 3e-1 34 1612121_a_at CF212973 hypothetical protein LOC100262769 - 1e+0 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative C.G. S.X.
0.01 1e+0 32 1607462_at BQ794751 hypothetical protein LOC100266376 - 3e-90 At1g23190 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative C.G. S.X.
0.03 5e+0 30 1621692_at BM437998 - - 2e-2 At3g16900 unknown protein C.G. S.X.
0.02 5e+0 30 1621597_at CB839537 - - 1e+0 At4g35987 unknown protein C.G. S.X.
0.03 5e+0 30 1620131_at CF415368 - - 2e-10 At3g01940 unknown protein C.G. S.X.
0.03 5e+0 30 1619824_at CB007139 - - 3e-1 At4g10100 CNX7 C.G. S.X.
0.03 5e+0 30 1619401_at CF373107 hypothetical protein LOC100250031 - 6e-2 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) C.G. S.X.
0.03 5e+0 30 1617720_at BQ792537 hypothetical protein LOC100256125 - 2e-11 At4g13400 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Arabidopsis thaliana At4g18500 827582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.06 9e-2 38 Glycine max GmaAffx.86112.1.S1_at BI787565 - - 2e-15 At2g39760 BPM3 C.G. S.X.
0.05 1e-1 36 Hordeum vulgare Contig13162_at Contig13162 - - 1e-2 At5g21010 ATBPM5 (BTB-POZ and MATH domain 5) C.G. S.X.
0.03 8e+0 32 Oryza sativa Os10g0401100 NM_196385.1 - Endonuclease/exonuclease/phosphatase familyprotein 6e+0 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.213316.1.S1_at pmrna26043 hypothetical protein - 5e-10 At3g57800 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.28597.1.S1_at CF132965 - - 1e-3 At5g21010 ATBPM5 (BTB-POZ and MATH domain 5) C.G. S.X.
0.04 7e+0 30 Zea mays ZmAffx.887.1.A1_at AI770835 hypothetical protein LOC100279492 - 6e-1 At2g36470 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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