Gene omics information

Query gene ID	1616230_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	S.X.	H.G.	Please select
0.83	94.6	1614054_at	CF206745.1	-	-	4e-47	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	S.X.	H.G.	Please select
0.80	93.6	1615753_at	CF207576	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.73	90.8	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	S.X.	H.G.	Please select
0.61	83.2	1609904_at	CF204988.1	hypothetical protein LOC100267206	-	4e-78	At5g61410	RPE	S.X.	H.G.	Please select
0.44	64.1	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.6	99.9	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
11.9	99.8	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
11.5	99.7	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
11.0	99.7	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
10.9	99.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
10.1	99.6	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
8.2	99.4	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
8.1	99.4	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
7.9	99.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
7.6	99.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	4e-28	121	1618031_s_at	CF404451	hypothetical protein LOC100243967	-	2e-12	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.44	1e-21	99	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.14	5e-9	57	1615543_at	CB341248	-	-	2e+1	At5g51610	ribosomal protein L11 family protein	C.G.	S.X.	Please select
0.08	8e-5	44	1618238_at	CB339270	-	-	2e-1	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.05	1e-3	40	1613701_at	CF206488.1	-	-	1e-13	At3g03250	UGP (UDP-glucose pyrophosphorylase)	C.G.	S.X.	Please select
0.05	2e-2	36	1622397_at	CF515693	-	-	7e-2	At2g39970	peroxisomal membrane protein (PMP36)	C.G.	S.X.	Please select
0.02	2e-2	36	1616426_at	BQ792444	RD22-like protein	-	7e-1	At1g76910	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	32	1620106_at	CF511459	hypothetical protein LOC100262007	-	3e-7	At5g52820	WD-40 repeat family protein / notchless protein, putative	C.G.	S.X.	Please select
0.02	3e-1	32	1619491_s_at	CF213714	hypothetical protein LOC100253896	-	2e-125	At5g17310	UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e+1	28	Arabidopsis thaliana	At5g43510	834371	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	5e+0	30	Glycine max	HgAffx.3477.1.A1_at	CK349213	-	-	3e+0	At5g27710	unknown protein	C.G.	S.X.	Please select
0.06	2e+0	30	Hordeum vulgare	HV12J02u_s_at	HV12J02u	-	-	2e-1	At2g07678	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	30	Oryza sativa	OsAffx.9041.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	32	Populus trichocarpa	PtpAffx.89035.1.A1_at	CV241252	-	-	7e-6	At1g15750	TPL (TOPLESS)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e+0	30	Triticum aestivum	Ta.7793.1.A1_at	BQ170170	-	-	5e+0	At4g33467	unknown protein	C.G.	S.X.	Please select
0.05	7e+0	28	Zea mays	Zm.5483.1.A1_at	AI622192	-	-	3e+0	At2g20605	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage