CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616213_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1616213_at CF212769 - - 3e-7 At2g03670 CDC48B S.X. H.G.
0.67 87.9 1606368_s_at CF208516 actin 1 - 0 At5g09810 ACT7 (ACTIN 7) S.X. H.G.
0.67 87.9 AFFX-Vvi-actin-3_s_at - actin 1 - 0 S.X. H.G.
0.67 87.9 AFFX-Vvi-actin-3_c2_s_at - actin 1 - 0 S.X. H.G.
0.60 81.9 AFFX-Vvi-actin-3_c6_s_at - actin 1 - 0 S.X. H.G.
0.19 20.9 1620700_at BQ799947 hypothetical protein LOC100261522 - 4e-20 At1g30230 elongation factor 1-beta / EF-1-beta S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 95.2 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147685 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 14
2.5 91.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-2 36 1615304_at CB341428 hypothetical protein LOC100252706 - 3e-11 At4g02790 GTP-binding family protein C.G. S.X.
0.03 1e+0 32 1620435_at CD721251 - - 9e-2 At1g12290 disease resistance protein (CC-NBS-LRR class), putative C.G. S.X.
0.03 1e+0 32 1617933_at CF513341 - - 4e+0 At3g22961 - C.G. S.X.
0.03 1e+0 32 1616687_at CD721251 hypothetical LOC100265292 - 9e-2 At1g12290 disease resistance protein (CC-NBS-LRR class), putative C.G. S.X.
0.03 1e+0 32 1615856_at CB349636 - - 2e-1 At1g19730 ATTRX4 C.G. S.X.
0.02 1e+0 32 1612249_at BQ797545 hypothetical protein LOC100242583 - 5e-10 At3g07050 GTP-binding family protein C.G. S.X.
0.03 5e+0 30 1621983_s_at CF405068 hypothetical protein LOC100245224 - 3e-1 At4g27480 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.03 5e+0 30 1621697_at CF207483 hypothetical protein LOC100247318 - 1e+0 At5g57440 GS1 C.G. S.X.
0.03 5e+0 30 1621478_at CF405653 hypothetical protein LOC100257276 - 4e+0 At1g10585 transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-7 56 Arabidopsis thaliana At2g03670 814895 CDC48B CDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog B - - - C.G. S.X.
0.06 1e+0 34 Glycine max GmaAffx.82513.1.S1_at BM092010 - - 2e+0 At5g06060 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HE01F04u_s_at HE01F04u - - 3e+0 At1g51913 unknown protein C.G. S.X.
0.03 2e-6 54 Oryza sativa Os05g0376200 AK099085.1 - Cell division control protein 48 homolog B(AtCDC48b) 5e-18 At2g03670 CDC48B C.G. S.X.
0.30 7e-52 204 Populus trichocarpa PtpAffx.220119.1.S1_at pmrna36459 hypothetical protein - 3e-40 At2g03670 CDC48B C.G. S.X.
0.05 3e-1 36 Triticum aestivum TaAffx.120241.2.A1_at BJ240301 - - 1e+0 At3g24517 unknown protein C.G. S.X.
0.04 1e-1 36 Zea mays Zm.12629.1.S1_at BU079978 double-strand break repair protein MRE11 - 6e-2 At4g19100 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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