Gene omics information

Query gene ID	1616211_at
Gene name	hypothetical protein LOC100250444
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1616211_at	CF415232	hypothetical protein LOC100250444	-	8e-1	At3g27630	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1622007_at	CD718228	-	-	3e-1	At1g09195	-	S.X.	H.G.	Please select
0.67	87.9	1606943_at	CF510910	hypothetical protein LOC100245618	-	2e+0	At2g46100	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1620028_at	CF512937	hypothetical protein LOC100241085	-	5e-23	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	S.X.	H.G.	Please select
0.55	77.3	1611583_at	CF405989	hypothetical protein LOC100250412	-	3e-5	At5g52020	AP2 domain-containing protein	S.X.	H.G.	Please select
0.46	66.5	1607189_at	CF405205	hypothetical protein LOC100261385	-	2e-2	At4g38190	ATCSLD4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	99.5	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
7.8	99.3	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
7.6	99.3	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43
6.4	98.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25
4.3	97.2	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	5e-55	212	1607196_at	CF215710	-	-	9e-1	At4g21140	unknown protein	C.G.	S.X.	Please select
0.16	4e-3	40	1612536_s_at	BQ794806	hypothetical protein LOC100255628	-	4e+0	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.03	2e-2	38	1622162_at	CD718954	-	-	1e+0	At3g02390	unknown protein	C.G.	S.X.	Please select
0.03	2e-2	38	1618383_at	CD718954	-	-	1e+0	At3g02390	unknown protein	C.G.	S.X.	Please select
0.14	2e-2	38	1613845_at	BQ796489	hypothetical protein LOC100253787	-	3e+0	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	C.G.	S.X.	Please select
0.03	6e-2	36	1622350_at	CF210825	-	-	7e-6	At5g46340	O-acetyltransferase-related	C.G.	S.X.	Please select
0.02	6e-2	36	1617822_at	CB976807	-	-	1e-42	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.03	6e-2	36	1615002_at	CD713297	-	-	5e+0	At5g25190	ethylene-responsive element-binding protein, putative	C.G.	S.X.	Please select
0.03	6e-2	36	1611229_at	CD713297	-	-	5e+0	At5g25190	ethylene-responsive element-binding protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-1	34	Arabidopsis thaliana	At3g27630	822385	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	8e-2	38	Glycine max	Gma.12212.1.A1_s_at	CD396776	-	-	2e+0	At2g12462	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	rbah38o04_s_at	rbah38o04	-	-	1e+0	At3g57072	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	OsAffx.19364.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	36	Populus trichocarpa	PtpAffx.73987.1.A1_at	DN487699	-	-	7e+0	At1g56555	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-1	34	Triticum aestivum	Ta.17936.1.S1_at	CA626126	-	-	5e-2	At5g60615	-	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.934.1.S1_at	BF729446	-	-	7e-1	At1g16910	LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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