Gene omics information

Query gene ID	1616198_at
Gene name	hypothetical protein LOC100242144
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	S.X.	H.G.	Please select
0.67	87.9	1608966_at	CB982651	hypothetical protein LOC100256404	-	2e-4	At5g59550	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.61	83.2	1614256_at	CB002433	hypothetical protein LOC100253803	-	2e-1	At4g18620	-	S.X.	H.G.	Please select
0.61	83.2	1622598_at	CF372747	hypothetical protein LOC100253485	-	3e-27	At5g22250	CCR4-NOT transcription complex protein, putative	S.X.	H.G.	Please select
0.55	77.3	1614505_s_at	CB975513	similar to At1g61340	-	2e-3	At1g61340	F-box family protein	S.X.	H.G.	Please select
0.55	77.3	1608256_at	CF404926	hypothetical protein LOC100265659	-	3e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.9	99.6	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
9.5	99.6	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.7	99.3	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.6	98.4	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.9	97.9	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-25	115	1617671_s_at	AY395744.1	hypothetical protein LOC100248784	-	2e-5	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.16	2e-25	115	1606975_at	CD799008	hypothetical protein LOC100248784	-	4e-5	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.11	4e-8	57	1621760_at	BQ794397	hypothetical protein LOC100241392	-	1e-8	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.08	4e-5	48	1611910_s_at	AY395745.1	similar to putative ethylene response factor ERF3b	-	9e-14	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.07	4e-5	48	1609990_at	CB009298	similar to putative ethylene response factor ERF3b	-	1e-13	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.02	6e-4	44	1622386_at	BQ794629	hypothetical protein LOC100264172	-	9e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.02	4e-2	38	1621379_at	CF214294	hypothetical protein LOC100267719	-	2e-4	At1g26750	unknown protein	C.G.	S.X.	Please select
0.06	4e-2	38	1621080_at	CF568964	-	-	1e-18	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.02	1e-1	36	1606520_at	CF212829	hypothetical protein LOC100261962	-	6e-10	At5g02790	In2-1 protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-7	57	Arabidopsis thaliana	At1g28370	839733	ERF11 (ERF DOMAIN PROTEIN 11)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	4e-30	133	Glycine max	Gma.17785.1.S1_at	AW102084	-	-	9e-12	At1g53170	ERF8	C.G.	S.X.	Please select
0.09	3e-16	85	Hordeum vulgare	Contig7722_at	Contig7722	-	-	4e-5	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.15	4e-12	73	Oryza sativa	Os05g0497300	AK111755.1	-	Ethylene responsive element binding factor 5(AtERF5)	4e-14	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-4	48	Populus trichocarpa	PtpAffx.22849.1.S1_at	CV240381	AP2/ERF domain-containing transcription factor	-	1e-14	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-9	63	Triticum aestivum	Ta.14000.1.S1_at	BQ789086	ethylene-responsive factor-like transcription factor ERFL1a	-	1e-5	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.11	2e-13	75	Zea mays	Zm.12317.1.S1_at	AY106969.1	ethylene-responsive transcription factor 4	-	2e-12	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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