Gene omics information

Query gene ID	1616191_s_at
Gene name	hypothetical protein LOC100253493
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1616191_s_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	S.X.	H.G.	Please select
0.61	83.2	1610821_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	S.X.	H.G.	Please select
0.55	77.3	1616944_at	CF211395	hypothetical protein LOC100261951	-	1e-1	At5g65400	unknown protein	S.X.	H.G.	Please select
0.53	75.2	1614440_at	BQ796922	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	S.X.	H.G.	Please select
0.43	61.5	1620412_at	CF511306	hypothetical protein LOC100247288	-	6e-10	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	S.X.	H.G.	Please select
0.40	57.7	1618362_s_at	CF200684.1	hypothetical protein LOC100255189	-	2e-74	At1g10670	ACLA-1	S.X.	H.G.	Please select
0.40	57.7	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	99.4	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.1	99.4	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8	99.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5	97.5	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
3.5	95.7	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	3146	1610821_at	CB971061	hypothetical protein LOC100253493	-	6e-48	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.02	7e-5	48	1621363_at	CA809467	hypothetical protein LOC100250687	-	5e-4	At1g13080	CYP71B2 (CYTOCHROME P450 71B2)	C.G.	S.X.	Please select
0.02	7e-5	48	1613920_at	CB979957	hypothetical protein LOC100260935	-	2e+0	At1g07830	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.01	1e-3	44	1622195_at	CB969266	hypothetical protein LOC100248937	-	3e-15	At4g07990	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	1e-3	44	1621663_at	CF211908	-	-	5e-1	At4g04650	-	C.G.	S.X.	Please select
0.02	1e-3	44	1621610_at	CF372731	-	-	8e-6	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select
0.01	1e-3	44	1620195_at	CB347615	hypothetical protein LOC100254082	-	4e-33	At1g76010	nucleic acid binding	C.G.	S.X.	Please select
0.02	1e-3	44	1618494_at	CF405291	hypothetical protein LOC100264126	-	7e-5	At1g18010	-	C.G.	S.X.	Please select
0.01	1e-3	44	1614437_at	CF406008	-	-	5e-1	At3g25882	NIMIN-2 (NIM1-INTERACTING 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	6e-48	192	Arabidopsis thaliana	At2g30490	817599	C4H (CINNAMATE-4-HYDROXYLASE)	Encodes a cinnamate-4-hydroxylase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	7e-98	359	Glycine max	Gma.3881.1.S1_at	X92437.1	-	-	8e-23	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.13	2e-21	103	Hordeum vulgare	Contig3442_at	Contig3442	-	-	2e-28	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.13	2e-40	169	Oryza sativa	Os01g0820000	9629.m05941	-	Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)(Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H)(Cytochrome P450 73)	1e-17	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	1e-130	468	Populus trichocarpa	Ptp.336.1.S1_at	CK088430	cytochrome P450	-	5e-35	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e-12	75	Triticum aestivum	TaAffx.58737.1.S1_at	CA616756	-	-	4e+0	At5g07500	PEI1	C.G.	S.X.	Please select
0.14	5e-53	208	Zea mays	Zm.7134.1.S1_at	CF634276	hypothetical protein LOC100272801 /// trans-cinnamate 4-monooxygenase	-	1e-18	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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