Gene omics information

Query gene ID	1616169_at
Gene name	hypothetical protein LOC100244482
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1616169_at	CD802101	hypothetical protein LOC100244482	-	2e-56	At1g72680	cinnamyl-alcohol dehydrogenase, putative	S.X.	H.G.	Please select
0.44	64.1	1616691_at	CD715631	similar to phosphatidylserine decarboxylase	-	1e-29	At5g57190	PSD2 (phosphatidylserine decarboxylase 2)	S.X.	H.G.	Please select
0.33	45.7	1613120_at	CF404918	hypothetical LOC100248029	-	5e-3	At1g18810	phytochrome kinase substrate-related	S.X.	H.G.	Please select
0.31	41.3	1607094_at	CD800565	similar to 30S ribosomal protein S11, putative	-	3e+0	At2g29700	ATPH1 (ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1)	S.X.	H.G.	Please select
0.30	39.4	1621866_at	CF414716	similar to Putative autophagy-related protein 12	-	8e-33	At1g54210	ATG12A (AUTOPHAGY 12 A)	S.X.	H.G.	Please select
0.27	34.0	1608047_at	CF405221	hypothetical protein LOC100267805	-	1e-5	At3g10260	reticulon family protein	S.X.	H.G.	Please select
0.22	25.6	1621716_at	BQ792788	hypothetical protein LOC100261303	-	4e+0	At2g42395	unknown protein	S.X.	H.G.	Please select
0.19	20.9	1607477_at	CB968954	hypothetical protein LOC100247294	-	2e-13	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.19	20.9	1622662_at	CF510959	hypothetical protein LOC100249169	-	1e-47	At5g23670	LCB2	S.X.	H.G.	Please select
0.19	20.9	1610836_at	CF208642	hypothetical protein LOC100257386	-	5e-10	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	99.3	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5	98.4	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.1	98.1	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.8	97.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6	97.6	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-10	63	1618794_at	CB976136	hypothetical protein LOC100240866	-	1e-13	At5g65010	ASN2 (ASPARAGINE SYNTHETASE 2)	C.G.	S.X.	Please select
0.03	3e-9	61	1621447_s_at	CF404909	hypothetical protein LOC100261458	-	1e-85	At3g26340	20S proteasome beta subunit E, putative	C.G.	S.X.	Please select
0.03	3e-9	61	1620931_at	CB915389	hypothetical LOC100243703	-	2e-2	At3g55940	phosphoinositide-specific phospholipase C, putative	C.G.	S.X.	Please select
0.03	3e-9	61	1619057_at	CD799697	hypothetical protein LOC100252925	-	1e-17	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select
0.03	3e-9	61	1613761_at	CB340543	hypothetical protein LOC100247570	-	2e-39	At4g22310	unknown protein	C.G.	S.X.	Please select
0.03	3e-9	61	1612226_at	CB974061	hypothetical protein LOC100259151	-	1e-29	At1g22280	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.04	3e-9	61	1609218_at	BM437324	-	-	3e-1	At4g40030	histone H3.2	C.G.	S.X.	Please select
0.03	3e-9	61	1608579_at	CF515265	hypothetical protein LOC100245274	-	2e+0	At5g60290	unknown protein	C.G.	S.X.	Please select
0.03	3e-9	61	1608339_at	CB915389	-	-	2e-2	At3g55940	phosphoinositide-specific phospholipase C, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	2e-56	220	Arabidopsis thaliana	At1g72680	843600	cinnamyl-alcohol dehydrogenase, putative	F:in 6 functions;P:lignin biosynthetic process;C:unknown;BOPFMAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	8e-32	139	Glycine max	GmaAffx.85150.2.S1_at	BI471813	-	-	1e-15	At1g72680	cinnamyl-alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.03	1e+0	34	Hordeum vulgare	basd24a19_at	basd24a19	-	-	4e-1	At2g33255	catalytic/ hydrolase/ phosphoglycolate phosphatase	C.G.	S.X.	Please select
0.07	8e-5	50	Oryza sativa	Os10g0194200	AK068221.1	-	Zinc-containing alcohol dehydrogenase superfamilyprotein	2e-1	At1g72680	cinnamyl-alcohol dehydrogenase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	1e-76	287	Populus trichocarpa	PtpAffx.203557.1.S1_at	pmrna7061	hypothetical protein	-	7e-28	At1g72680	cinnamyl-alcohol dehydrogenase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	4e-11	69	Triticum aestivum	Ta.9473.2.S1_at	CA640772	-	-	4e-7	At1g72680	cinnamyl-alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.02	2e+1	30	Zea mays	ZmAffx.556.1.A1_at	AI714513	-	-	1e+1	At4g23900	nucleoside diphosphate kinase 4 (NDK4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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