Gene omics information

Query gene ID	1616113_at
Gene name	hypothetical protein LOC100265360
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.6	1616113_at	CB974065	hypothetical protein LOC100265360	-	5e-9	At4g17180	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please select
0.40	57.7	1617995_a_at	CF512103	hypothetical protein LOC100242505 /// hypothetical protein LOC100262532	-	1e-13	At3g11710	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)	S.X.	H.G.	Please select
0.38	53.6	1608525_at	CF415433	hypothetical protein LOC100248018	-	3e-12	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	S.X.	H.G.	Please select
0.36	50.7	1614471_at	BQ792249	hypothetical protein LOC100245854	-	6e+0	At5g26594	ARR24 (Arabidopsis response regulator 24)	S.X.	H.G.	Please select
0.29	37.7	1614996_at	CF207591	hypothetical protein LOC100257675	-	2e-17	At1g80680	SAR3 (SUPPRESSOR OF AUXIN RESISTANCE 3)	S.X.	H.G.	Please select
0.23	27.5	1618829_at	CD801308	hypothetical protein LOC100245056	-	2e+0	At3g17770	dihydroxyacetone kinase family protein	S.X.	H.G.	Please select
0.22	25.6	1610720_at	CF214229	hypothetical protein LOC100243517	-	2e-15	At5g53800	unknown protein	S.X.	H.G.	Please select
0.20	22.4	1616246_at	CF207965	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select
0.16	16.7	1606698_at	CF404442	hypothetical protein LOC100249562	-	4e-1	At5g20550	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.05	6.0	1609748_at	CF517439	similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase	-	3e-1	At3g25440	RNA binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	98.0	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	32	1619225_s_at	CA809011	hypothetical protein LOC100251979	-	5e-55	At3g44110	ATJ3	C.G.	S.X.	Please select
0.03	1e+0	32	1610300_at	CF518694	-	-	9e-7	At3g23200	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1610210_at	CA812095	hypothetical protein LOC100263114	-	8e-28	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.02	5e+0	30	1622082_at	CD717632	-	-	5e+0	At1g25330	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1621818_at	CB971338	rd22-c protein	-	2e-1	At2g29525	-	C.G.	S.X.	Please select
0.02	5e+0	30	1621538_at	CA809611	hypothetical protein LOC100261262	-	4e-1	At2g43810	small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative	C.G.	S.X.	Please select
0.03	5e+0	30	1620935_at	CD718890	-	-	1e+0	At3g26140	glycosyl hydrolase family 5 protein / cellulase family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1620628_at	CF403671	neutral invertase	-	2e-37	At1g56560	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	C.G.	S.X.	Please select
0.03	5e+0	30	1620069_s_at	CB969496	hypothetical protein LOC100248991	-	9e-51	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-9	61	Arabidopsis thaliana	At4g17180	827429	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	2e-3	44	Glycine max	GmaAffx.83409.1.S1_at	BU090905	-	-	2e-8	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.03	6e-4	44	Hordeum vulgare	Contig19828_at	Contig19828	-	-	3e-11	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.04	1e-4	48	Oryza sativa	Os08g0326500	AK109514.1	-	Glycoside hydrolase, family 17 protein	1e-3	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	3e-23	109	Populus trichocarpa	PtpAffx.90645.4.A1_at	CK097863	hypothetical protein	-	5e-13	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.50275.1.S1_at	CA743483	-	-	7e-1	At1g23690	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.11678.1.S1_at	BM379888	hydrolase, hydrolyzing O-glycosyl compounds	-	4e+0	At1g17560	HLL (HUELLENLOS)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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