Gene omics information

Query gene ID	1616080_at
Gene name	hypothetical protein LOC100254062
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1616080_at	CF511120	hypothetical protein LOC100254062	-	5e-13	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	S.X.	H.G.	Please select
0.61	83.2	1609890_s_at	CA817702	hypothetical protein LOC100252402	-	5e-53	At2g04520	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	S.X.	H.G.	Please select
0.60	81.9	1614380_at	CD797929	hypothetical protein LOC100267715	-	2e-1	At2g17770	ATBZIP27	S.X.	H.G.	Please select
0.50	72.7	1610335_s_at	CF511082	hypothetical protein LOC100257917	-	7e-6	At4g14300	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	S.X.	H.G.	Please select
0.50	72.7	1612642_at	CB970994	hypothetical protein LOC100244706	-	5e+0	At3g43570	GDSL-motif lipase, putative	S.X.	H.G.	Please select
0.27	34.0	1606962_at	CF405430	hypothetical protein LOC100244131	-	4e-13	At5g14240	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	6e-19	93	1612457_at	CA818455	-	-	4e+0	At2g29840	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	2e+0	32	1615046_at	CF210436	hypothetical protein LOC100252241	-	1e-85	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1614961_at	CB971768	hypothetical protein LOC100257797	-	2e+0	At5g66660	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	C.G.	S.X.	Please select
0.02	2e+0	32	1610837_at	CB976769	-	-	2e+0	At3g17140	invertase inhibitor-related	C.G.	S.X.	Please select
0.02	2e+0	32	1608305_at	CF415367	hypothetical protein LOC100258034	-	5e-3	At3g23090	-	C.G.	S.X.	Please select
0.02	7e+0	30	1622049_at	CF415732	hypothetical protein LOC100251557	-	2e-2	At5g22020	strictosidine synthase family protein	C.G.	S.X.	Please select
0.02	7e+0	30	1621679_at	CB003331	similar to Os11g0657300	-	4e-22	At2g14285	-	C.G.	S.X.	Please select
0.02	7e+0	30	1619532_at	CF209809	hypothetical protein LOC100266310	-	5e-7	At5g67140	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	5e-13	75	Arabidopsis thaliana	At5g42970	834312	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	8e-65	248	Glycine max	Gma.2752.1.S1_at	AW569178	-	-	4e-26	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.26	3e-34	145	Hordeum vulgare	Contig6035_s_at	Contig6035	-	-	8e-5	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.18	5e-36	153	Oryza sativa	Os03g0197400	AK071413.1	-	COP8 (Constitutive photomorphogenic) homolog (CSNcomplex subunit 4)	1e-55	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.43	5e-97	355	Populus trichocarpa	PtpAffx.54182.1.A1_at	CV249623	-	-	4e-16	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	4e-26	119	Triticum aestivum	Ta.4468.1.S1_at	CK214137	Cop8	-	4e-52	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.16	7e-41	167	Zea mays	Zm.6611.1.A1_at	AW076483	hypothetical protein LOC100192688	-	1e-18	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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