CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616064_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1616064_at CF205270.1 - - 1e-4 At3g47540 chitinase, putative S.X. H.G.
0.31 41.3 1612436_s_at CF209460 isoflavone reductase-like protein 3 - 1e+0 At5g20520 WAV2 (WAVY GROWTH 2) S.X. H.G.
0.15 15.6 1619263_at CA814227 - - 2e+0 At2g03933 - S.X. H.G.
0.09 9.4 1616357_at CF516994 hypothetical protein LOC100255530 - 5e-16 At2g17220 protein kinase, putative S.X. H.G.
0.04 5.2 1613586_at CF513392 hypothetical protein LOC100245607 - 2e-3 At4g20830 FAD-binding domain-containing protein S.X. H.G.
0.02 3.2 1615595_at AF239617.2 class I beta-1,3-glucanase - 3e-3 At4g16260 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds S.X. H.G.
0.01 2.1 1618856_at CF207023.1 - - 6e-46 At4g27450 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.8 100.0 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
16.1 99.9 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
14.2 99.9 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
9.8 99.6 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
8.9 99.5 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3 99.2 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
7.2 99.1 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
6.4 98.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3 98.8 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
6.0 98.7 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 0 1334 1613461_s_at AF532966.1 class IV chitinase - 2e+0 At2g43590 chitinase, putative C.G. S.X.
0.71 0 1334 1611710_at AF532966.1 class IV chitinase /// class IV endochitinase - 2e+0 At2g43590 chitinase, putative C.G. S.X.
0.47 6e-87 319 1607557_at CF202548.1 - - 7e-3 At3g54420 ATEP3 C.G. S.X.
0.23 3e-39 161 1621319_s_at CB981122 - - 3e-1 At2g43620 chitinase, putative C.G. S.X.
0.24 4e-23 107 1617192_at AY137377.1 class IV chitinase - 4e-2 At2g43570 chitinase, putative C.G. S.X.
0.06 2e-12 71 1606625_at CF603972 hypothetical protein LOC100257850 - 1e-1 At2g43590 chitinase, putative C.G. S.X.
0.01 5e-1 34 1621583_at CF404733 hypothetical protein LOC100266937 - 3e-12 At1g05850 POM1 (POM-POM1) C.G. S.X.
0.02 2e+0 32 1621905_at CF414354 - - 4e-1 At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) C.G. S.X.
0.02 2e+0 32 1615211_at BQ797462 hypothetical protein LOC100267901 - 3e-8 At2g26280 CID7 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-4 48 Arabidopsis thaliana At3g47540 823908 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOF - - - C.G. S.X.
0.07 2e-7 57 Glycine max GmaAffx.89972.1.S1_s_at CF805697 - - 6e-5 At2g43590 chitinase, putative C.G. S.X.
0.04 9e-1 34 Hordeum vulgare Contig14498_at Contig14498 - - 9e-3 At2g43590 chitinase, putative C.G. S.X.
0.04 2e-8 61 Oryza sativa Os04g0493400 AB003194.1 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 4e-2 At3g54420 ATEP3 C.G. S.X.
0.18 5e-11 69 Populus trichocarpa PtpAffx.59940.1.S1_s_at CX657241 - - 1e-3 At2g43580 chitinase, putative C.G. S.X.
0.04 3e-2 40 Triticum aestivum Ta.2278.3.S1_x_at CD490414 - - 6e+0 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.04 5e-2 38 Zea mays Zm.1595.1.S1_at CD967190 endochitinase A - 6e-1 At3g54420 ATEP3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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