CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1616007_at

Gene name hypothetical protein LOC100264254

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1616007_at CB002013 hypothetical protein LOC100264254 - 3e-15 At1g19300 PARVUS (PARVUS) S.X. H.G.
0.44 64.1 1614089_at CF511077 hypothetical protein LOC100252201 - 1e+0 At3g14260 unknown protein S.X. H.G.
0.44 64.1 1610598_at CA818645 - - 4e+0 At5g20060 phospholipase/carboxylesterase family protein S.X. H.G.
0.22 25.6 1617942_at CF513248 - - 1e+0 At4g19830 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein S.X. H.G.
0.19 20.9 1607952_at CF372631 hypothetical protein LOC100250523 - 3e-8 At1g28440 HSL1 (HAESA-Like 1) S.X. H.G.
0.13 13.3 1610478_at CD717598 hypothetical protein LOC100247635 - 1e+0 At4g23885 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 96.2 GSM147701 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 30
3.7 96.2 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2085 1611237_at CB002013 - - 3e-15 At1g19300 PARVUS (PARVUS) C.G. S.X.
0.02 4e-2 38 1608941_at CF371822 - - 1e+0 At1g61920 unknown protein C.G. S.X.
0.02 6e-1 34 1620133_at CA816897 hypothetical protein LOC100256241 - 3e-2 At4g13220 unknown protein C.G. S.X.
0.02 6e-1 34 1612007_at BM437534 hypothetical protein LOC100246556 - 1e-10 At1g23360 UbiE/COQ5 methyltransferase family protein C.G. S.X.
0.02 6e-1 34 1608242_at BM437534 - - 1e-10 At1g23360 UbiE/COQ5 methyltransferase family protein C.G. S.X.
0.02 3e+0 32 1621877_at CB922518 hypothetical protein LOC100241998 - 6e-6 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.02 3e+0 32 1619963_a_at CD715008 hypothetical protein LOC100261868 - 1e-19 At4g21560 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) C.G. S.X.
0.02 3e+0 32 1618119_at CB982784 hypothetical protein LOC100257637 - 4e+0 At4g14420 lesion inducing protein-related C.G. S.X.
0.01 3e+0 32 1616307_at CB004173 - - 4e-39 At4g31050 lipoyltransferase (LIP2p) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-15 83 Arabidopsis thaliana At1g19300 838512 PARVUS (PARVUS) The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls. - - - C.G. S.X.
0.19 6e-17 89 Glycine max GmaAffx.79387.1.S1_at CA936677 - - 4e-6 At3g50760 GATL2 (Galacturonosyltransferase-like 2) C.G. S.X.
0.03 7e-2 38 Hordeum vulgare Contig13544_at Contig13544 - - 5e-2 At1g19300 PARVUS (PARVUS) C.G. S.X.
0.04 7e-2 40 Oryza sativa Os06g0247000 9634.m01370 - Avr9/Cf-9 rapidly elicited protein 231 1e-2 At3g50760 GATL2 (Galacturonosyltransferase-like 2) C.G. S.X.
0.29 3e-31 137 Populus trichocarpa PtpAffx.136323.2.S1_at DN500699 glycosyltransferase, CAZy family GT8 - 1e-16 At1g19300 PARVUS (PARVUS) C.G. S.X.
0.04 9e-6 52 Triticum aestivum TaAffx.12563.1.A1_at BJ254471 - - 1e-3 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.03 2e-1 36 Zea mays Zm.1452.1.A1_at CA403441 hypothetical protein LOC100191570 - 9e-3 At3g50760 GATL2 (Galacturonosyltransferase-like 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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