Gene omics information

Query gene ID	1616004_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1616004_at	CD802439	-	-	3e+0	At5g35375	unknown protein	S.X.	H.G.	Please select
0.16	16.7	1612207_at	CB973336	hypothetical protein LOC100257783	-	2e-6	At1g48195	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.11	11.3	1610167_at	CF403642	hypothetical protein LOC100254398	-	4e-12	At5g14220	HEMG2	S.X.	H.G.	Please select
0.09	9.4	1613703_at	BQ800381	hypothetical protein LOC100241006	-	5e-13	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	S.X.	H.G.	Please select
0.07	7.8	1606448_at	CB347801	hypothetical protein LOC100263631	-	1e-22	At4g00585	unknown protein	S.X.	H.G.	Please select
0.03	4.2	1621212_at	BQ794170	hypothetical protein LOC100260205	-	7e-5	At4g12790	ATP-binding family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.9	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.6	96.0	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
3.2	94.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
2.9	93.8	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.8	93.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	32	1617791_s_at	CB004910	hypothetical protein LOC100248739	-	1e-13	At2g41430	ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)	C.G.	S.X.	Please select
0.03	8e-1	32	1612260_at	CD798513	hypothetical protein LOC100266294	-	3e-30	At4g32690	GLB3	C.G.	S.X.	Please select
0.04	8e-1	32	1610689_at	CB969755	hypothetical LOC100252368	-	8e-1	At1g63055	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	1620879_at	CD715786	-	-	3e-1	At2g33796	-	C.G.	S.X.	Please select
0.03	3e+0	30	1619368_at	CD721452	-	-	1e+0	At3g57100	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	30	1618634_at	CF211062	hypothetical protein LOC100248740	-	5e-1	At1g64355	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	30	1617309_at	CB922444	hypothetical protein LOC100266331	-	6e-14	At1g44170	ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1)	C.G.	S.X.	Please select
0.03	3e+0	30	1617117_at	CD715786	-	-	3e-1	At2g33796	-	C.G.	S.X.	Please select
0.03	3e+0	30	1615557_at	CD721452	-	-	1e+0	At3g57100	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At5g35375	5008240	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	7e-11	67	Glycine max	GmaAffx.88420.2.S1_at	BG046793	-	-	3e+0	At1g62790	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	3e-1	34	Hordeum vulgare	Contig21626_at	Contig21626	-	-	4e+0	At5g59440	ZEU1 (ZEUS1)	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	OsAffx.18757.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e+0	32	Populus trichocarpa	PtpAffx.223243.1.S1_at	pmrna41135	hypothetical protein	-	1e+0	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-1	36	Triticum aestivum	Ta.8974.1.A1_at	BQ162712	-	-	3e+0	At4g23870	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	ZmAffx.927.1.S1_at	AI795433	hypothetical protein LOC100279113	-	3e+0	At3g05935	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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