Gene omics information

Query gene ID 1615991_s_at
Gene name hypothetical protein LOC100241833
Organism Vitis vinifera


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5375.21615991_s_atCF404409hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)S.X.H.G.
0.4057.71615058_atCB349554hypothetical protein LOC100251131-4e+0At3g28290AT14AS.X.H.G.
0.4057.71613489_atCF403663--5e+0At3g25572CPuORF11 (Conserved peptide upstream open reading frame 11)S.X.H.G.
0.2937.71609452_atBQ794280hypothetical protein LOC100249768-3e-1At4g31460ribosomal protein L28 family proteinS.X.H.G.
0.2327.51618197_atBQ797561hypothetical protein LOC100250454-4e-3At1g09140SF2/ASF-like splicing modulator (SRP30)S.X.H.G.
0.1313.31606661_atCD004606hypothetical protein LOC100246447-2e+0At5g08050-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.996.6GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
3.696.0GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
3.194.6GSM436388V. riparia (VR, PI588259) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancy
3.194.6GSM436392V. riparia (VR, PI588259) LD, 15h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
3.194.6GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
3.094.2GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancy
2.993.8GSM436390V. riparia (VR, PI588259) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
2.893.4GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
2.893.4GSM436393V. riparia (VR, PI588259) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
2.793.0GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.97014371617779_atCF404409hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.6308721614482_atCF206009.1hypothetical protein LOC100241833-2e-21At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.307e-772861612276_atCF403133hypothetical protein LOC100262110-1e+0At1g80160lactoylglutathione lyase family protein / glyoxalase I family proteinC.G.S.X.
0.031e-4461620045_atCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.022e+0321620891_atCD715446--3e-69At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
0.042e+0321618184_atBQ795140hypothetical protein LOC100255523-5e-84At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)C.G.S.X.
0.022e+0321617124_atCD715446hypothetical protein LOC100247246-3e-69At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
0.032e+0321614651_atCF403860--2e-1At2g32650-C.G.S.X.
0.032e+0321612869_atCF210466hypothetical protein LOC100250869-3e-1At5g06950AHBP-1BC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.201e-22107Arabidopsis thalianaAt4g38130829969HD1 (HISTONE DEACETYLASE 1)Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.---C.G.S.X.
0.059e-652Glycine maxGma.2052.1.S1_atBM522377--9e-3At1g44830AP2 domain-containing transcription factor TINY, putativeC.G.S.X.
0.101e-2099Hordeum vulgareContig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.054e-1273Oryza sativaOs06g0583400AF513382.1-Histone deacetylase HDAC16e-61At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.258e-31135Populus trichocarpaPtpAffx.6033.2.S1_atBU889316histone deacetylase-9e-55At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.098e-1891Triticum aestivumTa.23826.1.S1_atBT009381.1Histone deacetylase HDAC3-3e-41At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.092e-25115Zea maysZm.398.1.S1_atAF384032.1histone deacetylase HDA101 /// RPD3 histone deacetylase homolog-1e-30At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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